Array 1 3531216-3534303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016990.1 Aeromonas hydrophila strain ZYAH75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3531216 28 100.0 32 ............................ AAGCGCAAGGCCGCCCCTAAGGAAAGCGACCT 3531276 28 100.0 32 ............................ TGGTTGACGGTCACGCCAGTGGCGTATCCCTC 3531336 28 100.0 32 ............................ AAGTCCAGCTTGAGGGCATAGAGCGCTGTCAC 3531396 28 100.0 32 ............................ ATCCCGACGATGATAGCGAGCATCATGATGGG 3531456 28 100.0 32 ............................ AGTACGTCGGCCCGGCTAAGTTGGTGGCGGCG 3531516 28 100.0 32 ............................ CAGGAGGAATTCGACTACCTGATGGACCTTGA 3531576 28 100.0 32 ............................ TCACCTACACCCCCAAGAAACGGTACGACCAC 3531636 28 100.0 32 ............................ ACATATATCTCGGTTCGAGTAACGTTGCTGGA 3531696 28 100.0 32 ............................ TGGCAGAGCGTGATCCCGAACATGATCCAGCT 3531756 28 100.0 32 ............................ ACCGATGGGGCCACCGAACGACGCCAGGGCGT 3531816 28 100.0 32 ............................ TCAGCGAACGTCGACCCGGACATCATCATCTC 3531876 28 100.0 32 ............................ AGCTTGACCTCGGTGGGGCACTCGTCGAGAAG 3531936 28 100.0 32 ............................ TGGGGTGGCTACCGCGACCACCGCGACCACCG 3531996 28 100.0 32 ............................ GACAACCAAGACCGACCCTTTCGAAGGAAACA 3532056 28 100.0 32 ............................ AGGATGACCCCATGGCCCAAGCCATGGTGGCG 3532116 28 100.0 32 ............................ TGGGAAATCGAAGTGCGGGGCAACATCCAGGT 3532176 28 100.0 32 ............................ GACCTGCGCTATGTCCTGCTGACCGATGACTC 3532236 28 100.0 32 ............................ ATCGGCAGCGTGAAGGACGCGCTGCAGGCGCT 3532296 28 100.0 32 ............................ GTGAAGGTGACATAGGCCACCCCATCTTCTTC 3532356 28 100.0 32 ............................ ACCGGTTAGAGGATGTGTGGGGCAGCGTGGAT 3532416 28 100.0 32 ............................ CGTTCGGCCAGGGCCGCCCGGATGTCGGTTCG 3532476 28 100.0 32 ............................ AGTTCAAGGAGCTGTTCGGTTATGGCTCTGAC 3532536 28 100.0 32 ............................ CTGCCTGTTTGGCCAGTTGAATGAGCGGGCAT 3532596 28 100.0 32 ............................ GTCGAGAGATAGATTAGGCGAAATCCGCCTAA 3532656 28 100.0 32 ............................ TACAGGGCATTGGTGCCAATGTAAAACCGCTG 3532716 28 100.0 32 ............................ GGTGGCCTGCCGAGCGGCATCCTCAGCGATGC 3532776 28 100.0 32 ............................ TTGGCGGCCTGTTGCGGCATAGGCGGCAAAGA 3532836 28 100.0 32 ............................ TCGACGGGGCTTAGTGTGATCTGCCGGGATAT 3532896 28 100.0 32 ............................ AGCACCCGAGTGGATGTGCTCGACGAGGTGAC 3532956 28 100.0 32 ............................ ATGCTGACCCACATCATGGTCAAACTGAAAGA 3533016 28 100.0 32 ............................ ATCATCGGATCCGGTTGCTGGGCCTGAGCCTG 3533076 28 100.0 32 ............................ AATGGCGATGGAAAGCTGTCAGCGGAAGAGGC 3533136 28 100.0 32 ............................ ATATCCAGGTACAACTTGAACTCTCCAACATC 3533196 28 100.0 32 ............................ CAGCTCATGGATGGGCAGGTCGGGCGGACATC 3533256 28 100.0 32 ............................ CCGACGAGCCCGAGCTGGTCGCCGCTACGCAA 3533316 28 100.0 32 ............................ AGATTGGCAAATCCGCATCATCACCACCATTC 3533376 28 100.0 32 ............................ TACCTGAAATTCAGTGAGCCGGGTATGGGGTC 3533436 28 100.0 32 ............................ AAGAAAAGCACCGACAGTACCGAAAGCACCTC 3533496 28 100.0 32 ............................ AATAAAAGCAATCTGGAGCGCGACCTCGATAA 3533556 28 100.0 32 ............................ GGTACCGTCGCGAAAGCGGCCACCCCGGTTGC 3533616 28 100.0 32 ............................ ATCATCGGGTAGGGCTCGTCGTAGGCCGTCAC 3533676 28 100.0 32 ............................ GGGATCGACATCGAGCTTGGCAAGGCTGTGCT 3533736 28 100.0 32 ............................ CCGACGCGATCCCGCCTGTGGATCAAGCCTAT 3533796 28 100.0 32 ............................ AGCTGCGGGAACTGGGCCTTGATGTCGGCCAC 3533856 28 100.0 32 ............................ TGTCGGGCATGACGTGGAACGGTAACCGCCTG 3533916 28 100.0 32 ............................ TACTACGCCAAGGGCAACTTCACCTACAACCT 3533976 28 100.0 32 ............................ TCGAAAAAGAACTACTGTCCTGTTACCAACCA 3534036 28 100.0 32 ............................ AATGGAGAAAATCGTCATGGCACCAAGAAAAG 3534096 28 100.0 32 ............................ AGTGACTCCACGGCCTGTTTAATTGTGTTCAT 3534156 28 100.0 32 ............................ ACATTGGTGATGCCTGCCGCTGCGATCTTCCC 3534216 28 100.0 32 ............................ AGGAACGCATTACCTCCTGCGCCGATGTTGTG 3534276 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : TGGCCGAACTGCTTAACCTTACCGAGGTGAACTGGTTGCAGGGGATGCGGGACTATATCCAGCTCGGCGAACCAGAACCCGTTCCTCAGGGAGCCAGCTTTCGTGTGGTAAGGCGGGTGCAGGCCAAGAGCGCTCACAACAAGCGTCGCCGCTCGGTGGCCAAAGGCTGGTTGAGCGAAGAGGAGGCGCAGGTTCGCATCCCCGATGCTCAGCAGAAGGCGATGTCTCTGCCTTATGCCGAAATGCACAGCCTCTCGACCCAAAGCCGGATGCGCCTCTATATCGAACACGGCCCTCTGCTCGATAAGCCTGTCGCCGGGATGTTTAACGCCTATGGGCTAAGCACCACAGCCACCATCCCCTGGTTCTGACCCTCTTTTTCAGGGCGTAGCTAACTCATTGATTTTTCAATGTCTGTTACGCCCTGATAAAAATAGGGTTCAGTGACGGATTTGGGGTAAGTTCTTTAACAATCAATTAGATAGCACTAATATGTAACA # Right flank : ATCTGGCTGGCCGCGCTCGGCGATTGTCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAGCTCCTGACAGTTCAATATCAGAAGTGATCTGCACCAATCTCGACTATGCTCAATACTCGTGTGCACCAAAGCGAGGTGAGCATGGCGACGGAGGCTCTGTTGCAAAGATTGGCGGCAGTCAGAGGTAGGCTGTCGCTCTGCGCCGATCAGGCGGCTGCTGCGAAATGGTGGTTGAGCATGCCCATGGCCTCCGTCAGCGCCGAGGGCCCAATGCCAAAAGCTCTCTCCACAAGGCGCACCTCGCCCCTGATGCCGGGCTGCAGGCACCAGGGGCGAGCCTGTCCTTTGCGCAGGGCTCGCATGACTTCGAATCCCTTGATCGTGGCATAGGCCGTGGGGATCGATTTGAAACCGCGCACCGGCTTGATCAGTATCTTGAGCTTTCCGTGATCGGCCTCGATCACGTTATTGAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3564803-3565370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016990.1 Aeromonas hydrophila strain ZYAH75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3564803 28 100.0 32 ............................ GCCAGGGTGCAGCTTGGTGAGGCTATTGAGCC 3564863 28 100.0 32 ............................ TGTCTGCACGGCAAAAAAGCCGGCTGGATGAC 3564923 28 100.0 32 ............................ GGTATCCGGCGGGCCAGGGTGAACACGTCATT 3564983 28 100.0 32 ............................ TTTGATGTCGCGCATCACGCCATCGAACGCCT 3565043 28 100.0 32 ............................ ACTGGTGCCAACCTGTCTCGCCTATCCAAGAA 3565103 28 100.0 32 ............................ ATGAACAACACTTTGAAATGGGGTGTGATTTC 3565163 28 100.0 32 ............................ AACGTCAGCCTCGGAGATCAGGTGCTGGCCAT 3565223 28 100.0 32 ............................ GCAGTCGTAATAGCCGAACTCTATGACGTTGC 3565283 28 100.0 32 ............................ TGGATAAACCACGCGATGGTCTGGTCGTTCAC 3565343 28 82.1 0 ..................TCA....TT. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : GCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACAAGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGCGGTTACGACATTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACGTCTCTACGACGATGATTTACACGCATGTGCTGAAAGTTGGCGGTGCCGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCCTCACTAGTGAGAGGTAGGGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCATCGAACGGCCGGTTGCGGAAAGTCCTCCCTGCGTCCGCTGATGGCCGGCAGCAGCCCGTCGTTGCCTGATGGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACAGCGATGGTGGACAT # Right flank : ACTGGTTGCAGCTAAACCGGAAGGGCCGCTGACTGCAGGTTCATTCCACTCCAAGATCAGTGCAATGCTGGTTATTGAGCTACTGGGTCAACAGCTATTGGAAAATAGGCCAGAGCTGGCGGGAGCTATCTCGGATAGTGCCAAGGCTACGTTGCCTTGGTTGATACAATCGCTAGCGAGGGGAGCATCATCAATACTTGGACACCAGACTGGATCGATGTCCAATGTAATCCATCCGGGTAGTATGTCAGCCAACATCAAATGGCACACTGAGTGGCATACCACAAAAATATAAAAAATTAAAAACCCAACCTAATCAATAGGTTGGGTTTGGTATGTGGCGGAGAGACAGGGATTCGAACCCTGGGTGGCATTGCTGCCACAATTGATTTCGAGTCAATCCCGTTCGGCCACTCCGGCATCTCTCCACGGGGCATCATTGTTACCGGAGCCGCCTCTGGAAATCAACTTGAATCTCTTTAAAGATCAAACAACTGCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //