Array 1 26340-24750 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFX01000006.1 Lactobacillus helveticus strain IMAU50064 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26339 32 90.6 6 .............................TGA GATGAA Deletion [26302] 26307 32 100.0 34 ................................ TTTGGAAGCCTTCCAGTTAGATTAGAGCCAACAT 26241 32 100.0 35 ................................ AGCAGCAGACTACATGGAAGACTAAAGTTTGATGC 26174 32 100.0 34 ................................ ATTTTGCAGCCCTCCTTCAATACCATTTTACTAC 26108 32 100.0 34 ................................ GTTTCATTGATATAAATATCAACGGTACCATTAT 26042 32 100.0 34 ................................ TCCTCGCAACCGTGCCATGATCCTTTCTCAGCGG 25976 32 100.0 34 ................................ ATGATGGGCTACCAGTATCCAACACATTGTCTAA 25910 32 100.0 35 ................................ GTAAGTGTTTAGTAGCACAAAAGAATTTTGCAGAA 25843 32 100.0 33 ................................ AATCGAAAGCTCAATATATCCCTGTGAAATAAC 25778 32 100.0 35 ................................ AACCATTTAAACAAGAACAATCCGCAAGTACACGC 25711 32 100.0 34 ................................ CTATTGCGTTGTTCATCGCAATAAGATGTAGGGT 25645 32 100.0 34 ................................ TTTGACCGACTGCATACGCATCGGCTGCCGAATC 25579 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 25513 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 25447 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 25380 32 100.0 34 ................................ TAAATCAGAAGCTAAGCCAGGTGATCCTGTCTTT 25314 32 100.0 35 ................................ TTTTTCATATTTCTCAACGAGTTTTTTACGAATGT 25247 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 25179 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 25111 32 100.0 34 ................................ TTAACGGAAGTATGGGGCTTTCCAAACATGCCAC 25045 32 100.0 34 ................................ GATTTGGTAGAAGGGCAAAATTACACAATTGGTA 24979 32 100.0 34 ................................ ACTTAACAGATGATGCAGACGTAACTGTTGCATC 24913 32 100.0 34 ................................ TTTTTTTACCTCCCTTAATCCTTACAATTTTTAT 24847 32 100.0 34 ................................ ACTTAACAGATGATGCAGACGTAACTGTTGCATC 24781 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.6 33 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCGG # Right flank : TTTTTTTACCTCCCTTAATCCTTACAATTTTTATGTCGCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATAATTGACCGTCGCACTCCTTGTGAGTGCGTGGATTGAAATAAGTAATACCGCACTTACTTGGGCTGATCTTGGAGTCGCACTCCTTGTGAGTGCGTGGATTGAAATAATATCTTCTAAGCTAGTATAAAACTCGTCATTTGTCGCACTCCTTGTGAGTGCGTGGATTGAAATACCCTGGAAAATACGCTTGCTATAACAGATATACGTCGCACTCCTTGTGAGTGCGTGGATTGAAATTCCCATGTTTTAGGTTTGAAAGTCTCATCTAAGTCGTCGCACTCCTTGTGAGTGCGTGGATTGAAATAGACTACTTTGCAAGCG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //