Array 1 38773-40630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLD01000008.1 Salmonella enterica strain CFSAN064280 CFSAN064280_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38773 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 38834 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 38895 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 38956 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 39017 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 39078 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 39139 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 39200 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 39261 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 39322 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 39383 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 39444 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 39505 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 39566 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 39627 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 39688 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 39749 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 39810 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 39871 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 39932 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 39993 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 40054 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 40115 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 40176 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 40237 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 40298 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 40359 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 40420 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 40481 29 96.6 32 ....................A........ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 40542 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 40603 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57312-58990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLD01000008.1 Salmonella enterica strain CFSAN064280 CFSAN064280_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57312 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 57373 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 57434 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 57495 29 96.6 32 .G........................... CGCCCCCCGCATACAGCGAGAGACGGGCCATG 57556 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 57617 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 57678 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 57739 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 57800 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 57861 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 57922 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 57983 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 58044 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 58105 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 58166 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 58227 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 58288 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 58350 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 58412 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 58473 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 58534 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 58595 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 58656 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 58717 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 58778 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 58839 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 58900 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 58961 29 100.0 0 ............................. | A [58988] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTGGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //