Array 1 111090-112520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYH01000006.1 Salmonella enterica subsp. enterica serovar Rissen strain 01-0479 NODE_6_length_239084_cov_2.88584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111090 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 111151 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 111212 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 111273 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 111334 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 111395 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 111456 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 111517 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 111578 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 111639 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 111700 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 111761 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 111822 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 111883 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 111944 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 112005 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 112066 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 112127 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 112188 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 112249 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 112310 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 112371 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 112432 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 112493 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129132-131052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYH01000006.1 Salmonella enterica subsp. enterica serovar Rissen strain 01-0479 NODE_6_length_239084_cov_2.88584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129132 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 129193 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 129254 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 129315 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 129376 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 129437 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 129498 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 129559 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 129620 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 129681 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 129742 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 129803 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 129864 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 129925 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 129986 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 130047 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 130108 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 130169 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 130230 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 130291 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 130352 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 130413 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 130474 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 130535 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 130596 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 130657 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 130718 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 130779 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 130840 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 130901 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 130962 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 131023 29 93.1 0 A...........T................ | A [131049] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //