Array 1 168222-166543 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDML01000006.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 214 NODE_6_length_274312_cov_6.65242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 168221 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 168160 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 168099 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 168038 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 167977 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 167916 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 167854 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 167793 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 167732 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 167671 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 167610 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 167549 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 167488 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 167427 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 167366 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 167305 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 167244 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 167183 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 167122 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 167061 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 167000 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 166939 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 166878 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 166817 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 166756 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 166695 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 166634 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 166572 29 86.2 0 TAA.........T................ | A [166545] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184935-184358 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDML01000006.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 214 NODE_6_length_274312_cov_6.65242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184934 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 184873 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 184812 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 184751 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 184690 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 184629 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 184568 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 184507 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 184446 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 184385 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //