Array 1 766298-765753 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000001.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 766297 29 96.6 32 ................T............ CAGGCCTACAGCGCTGCGCAGTGGCCGCAAGA 766236 29 96.6 32 ............................G TTCCCCAGGCCCTCCGCCGGGTTCGACCGCGA 766175 29 100.0 32 ............................. CCTGAAAAACCAGGGTTGAACCCTGACCATTT 766114 29 100.0 32 ............................. ATACCAGTCACAACGAGCGAGTATCAAAGACC 766053 29 89.7 181 .............A.......A......G CACGATGCTCGCCCGCCGCCTCGGCGGGCTTGACCGCCACGAACCGCGCCGTGAACGTCCCGCCGCGCTGCCCGTCCAGCCGGGAGTCCGTGAAGGGGCCCTTCACGGACTCTGAGGCTGTGAAGGGCCCCTTCACAGCCTTTCGCCGGGGTGTCGCGAGAGATCGGGCATGGCTATTCCC G [766043] 765842 29 86.2 32 ....G......A.A...........C... GCGGCGATGGCTGCCAACCCGATCGGGCTGAT 765781 29 89.7 0 .............AA......A....... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 7 29 94.1 57 GTTCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTGCTCGTCCTGACCGTCGGCGGCCGGGCAACCGTCCCGCTCCTCGCCGCAAGCACCTTGTGGGGGCTGGCTTTCGGCGGCGCGCCGACGTCTTTCCAGGCCATCACAGCACGGCTGGCCGGCCGCCGCGCCGACACCGCGCAATCCCTGACCATCGCAAGCTGGAACGCCGCTGTCGCCGGCGGAGCCCTGTCCGGCGGAATCCTGCTCGACACGGCTCCCGGCGCGCTGCCTTGGATGGCCATCGCGTTGATGACCGTGCCGATCGTGCTCGCCGGGCGGGTCCTGCCGGGGCGGGAACGGCCGCTACCGTCGTCGGAGGTGTGATGGCGTCCGGGTACGCAGGCTGCCGCCTCCGACGAATCCTCTCGTCGTGGCCGTCGAGCATCTCAGCCCGCTTGCGACCCCGCAAACGCCGAACCCCGTATGCTGACCGGAGACCGCTGAGCAAACTGAAGGAAAACCTGCCACCCGGGGCGTAAAAGCCGAGGTCAGGAAGT # Right flank : GTGAATCCGCCGCCGAACACCGCCAGCCGCTGATTCTCCCAGCCCCAACCCTCACCACCTCACCGAGCAGGCGCCACACTGATCAACCCACACCCATACGCCTTCGCCCGCCCCACACCATTCACCAGCGCTGCCGTGAACGCGCCCACATCAGTGACCACCAATCGCCCATCAAACCGCACCGCCTCCACCGTGATCTTCGTCTTCGCGTTCTTCCGCCCGGTGATCGTCGGCACCACCGTCACCGCCACGTCCGGCCGGCCACCGGCCGCGCCCGGAATCACGAAACCATGCCGTTCGCCTTTCCGGACCAGCCAATCGAGCTGGTCATCCGGCTGCCGGTACGGGATGTGCTTGCGTGTCTGCCCGTCACACCGGGTCGGGTTCGCGACCATCCGGAACGTCAGGCACCGGCCGGCGGTCACGGCGTCCAGGACCGGTTGCAGGGAACGGGTCTCGGCCGGCTTGACGAGGTGACCACCGGCGAGGGTGTTCCAGTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.65, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4343514-4342998 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000002.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4343513 29 100.0 32 ............................. GAATGGCCGGCCAGGTACGACCGGGACCGGTA 4343452 29 100.0 32 ............................. CGCGCCGATATGGGCGGACGTCGATCCTGTGG 4343391 29 100.0 33 ............................. TTCTGGAACGTCTCCGCCTTGTTGATCCCGCGT 4343329 29 100.0 32 ............................. TTCCAGCGGGACCTGGACTCGTTGCCGAAGCT 4343268 29 96.6 32 ............................G GGTTTTCGCTACGTGATCTTTTAGCGGCAAGC 4343207 29 96.6 32 ............................G CGCCCGAGGGTGCGGTTGGCGTCGATCACGAT 4343146 28 93.1 32 .....-......................T GATTGCCAGTAGCCCGCACGCTGCCGCCGTTC 4343086 29 93.1 32 .......T....................G GTCGCATCCGCAACGGAAAATCGCAAGCCGTA 4343025 28 72.4 0 ...GG.T........C...C.-...C..A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 94.6 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CCGCCTACGTCGGCGACAACCGCTGGCCCGCCGCCCACACCCTGGACGTCGCCCTGCTCTACGCGCTCGCGCTGGACAAGGCCCCGGCCGGAACCGAACTGGGCGCCGCCGCCGAGGAGGGCATCCCGGTGCGCGAGATCGCCGAGGCCATCGGGCGGCATCTGGACCTGCCGGTGAAGGGCATTTCGGCCGAGCGGGCCGCGGAACACTTCGCCACGTTTCCGTTCGTTGGCATGGATATCACGATGCCGAATGCGGAGACCCGGCGGCTGCTGGGCTGGGAGCCGACCCATCCGGGGCTGCTGGAGGATCTTGAGGAGGGGCACTATTTTGCGGCCGGTCGGTAGGGCCGGAGTCGGCTGTGGCGGCAGGGCTGGCGGACTCGTCCACCGGTACGACGACGCTTACCGGTCCCGCCCCAGCGGATAGACTCCTCGAGGGGTGCGAGCAAAGTGAAGTAGAACTGGGCACCTTGAGGGTAAAATTGCAGGTCAAGAAGT # Right flank : GGGCTGAGCCCACCTCGCCGCCGCCTCCGTCTGTGAAGGGCACCTTCACAGACTCTGAGTCCGTGAAGGTGCCCTTCACAGCCCACCGAGTTCAGCGCGGCTCCAGCGGGTAGTTCACCGCGGATCTTGCCGGGCACCTGTTCCTGGCGTCGGCGGGAGCGAAGGCCGATTCGCCGTCGCTGGAGATCTATCGCGAACGAGTGTGCATCGCAGTCCGCATCGTGCTCAACGGCCGGGCGGGCGCGAACCTCAGGCCGGCGCCTCGTCCAGAGCCTTCGTGATCCGCTTCAACGACACGGGATAAGCAGTGCCGAGCGTCTGCGCGAAGAAGCTCACCCGCAGCTCCTCGATCATCCAGCGAACCTCCGCCAGCGCCGGCGACGACGTCCCCGGCGGCAAGGAAGCGAGTGCGGCCTCGTACTCGCGCGTGATCCACGCGATATCCGCGGTCCGCTGCAGATCCCGGGTCGGGTCGGTGGGCAGCTTTTCCAGCCGGCGCA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4441555-4441005 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000002.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4441554 36 100.0 36 .................................... CCGGACCGGGTTGCCCCGATCACCGCGGTCGGCACC 4441482 36 100.0 38 .................................... TTCGAATCCCGTCTCCACCTCGCGCGATTAGCTCAGCG 4441408 36 100.0 37 .................................... ACGCCGAGGCCTCCCCGGGTTCGGCGGCGCCGTCGAT 4441335 36 100.0 36 .................................... GTTTCGCCGCTTCGCCTCGTCGATCCATTCCGGGAT 4441263 36 100.0 37 .................................... ACGCCGAGGCCTCCCCGGGTTCGGCGGCGCCGTCGAT 4441190 36 100.0 36 .................................... GTTTCGCCGCTTCGCCTCGTCGATCCATTCCGGGAT 4441118 36 97.2 42 ...................................T GAGCGGGACGAAGGGCCGCACATCGCTTGGCGGCGCGTGCTG 4441040 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 99.7 38 GTGCCTCCGGCGCACAGCGCCGGACTCCATTGCGGC # Left flank : GGTTGCTCGTGTGGTGGCGCGGGCGGTGTTGATCGCGGCCAGTGCCGCGTTGACGTCGTCGGCGAGGGTGGCAATCAGACGGGAGACGGTGGGGTCGGAGGCGACCGGGCCGAACAAGCCGGGTTCGGCGCGCAGGATGGAAATGTCGGCCAGGCAGTCACCGCCCAGAGCCAGTGTGACGGCCAGGTCGCAGATGATCTTGGCGGGGTCGTGGATGGCGTTGGGGTGCCGCCAGCGGGCCATGGCTGTCGAGAGTGCCTGGTAAAGGCCGGTTTTGGTCACCGTGGTGGTCAGCAGTGTCGCTCCTGCCTGCGACACGATCACTGTTCCCGTGGTGTCGACCGTCAACGATGGGTAGGCCCCGGTAGGCTTGCTCACCAGAAAGGTGCTCCTGTGCTGGTTCGGACATGACCCTCGACAAGTCATATCCTTGCAGCTCAGAGCACCTTTCTCCTGTATTGACACCCATCACGCCGAATCGGCACGAAAGCGGCGGGCTA # Right flank : CAGGGGCGGCCATCGCGGTAGGCCAACCCATCAACGTCGCGACTTGGGTGTCTTTGCTGGGGATCACTGCGATCGGCGACATGCTTCGTGATCGAACGTCCGCGTCACCAGAAGAGCCACAAGAAAAGTCGTCAGCAAGACGGAGCGGCAGCACAGCAACGTGAGCCGCCGAGGACCCGCAGCTTCGCCTGGAACAGGTCCGGGGAGGCTAGGGAGAAGCTCTTCGATGACGCCGAGGACTGGTCGACCGCTCCTACCGGATCCAGCTGACCGGCCGAGCCGGTGGTGCCGACCGGCACGGTAGCGCGAGAGGCGGGGAAATTCACCCAGATCGGTTACGCCGTAGACCCGGTTCTCTCAAGTTGTCGGAAAAGCTCTCGCTTAAAGCGAGAGGACGGCTCGCGCCTTTGACCTGCACGGATCAGGTCTTACGATCGAACATGTGTTCCCGCGTGGCGTGGGAACGGTCATCGCTGTCTTCCCCGCAGCGGTCGGGCACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTCCGGCGCACAGCGCCGGACTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.30,-15.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 4443283-4444221 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000002.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 4443283 36 100.0 40 .................................... ATCCGGATCATGGACCTAAGGTTTTTTGCCTCTACCTATA 4443359 36 100.0 38 .................................... ACCCGGTGCGGTGAGGACCGGGTTGCCGACTACGCGTG 4443433 36 100.0 36 .................................... GGAGGCGTCTCTGAGGCGGCGGCTCGCACGTGACAC 4443505 36 100.0 36 .................................... CGCAGGGCGGGCCCCCCTACAGCATCGAGAGTTATC 4443577 36 100.0 36 .................................... CTGGAGCAGCCCGGCGAGCTGCTCGCTCAGGAAGTC 4443649 36 100.0 43 .................................... ATCGCGACGTCGCCGACGAGCTGCAGCGGATTGCACCGGAGAC 4443728 36 100.0 41 .................................... CCCGAAACTCAGAGGGAAGGTCAGCCGACCTTGTTCATGCG 4443805 36 100.0 41 .................................... AAGCTCCTGGACGCCCAGGCATTCACGCACGGACAGATCGT 4443882 36 100.0 41 .................................... TCCGGCGGTTCCGGACTGGTGTCACCCGCCGCTTCTTTTGC 4443959 36 100.0 39 .................................... AACCCGAAACACCACCGAGCCGCCGCGTGGAGGGCTCGG 4444034 36 100.0 41 .................................... CTCACCGGAACCGCTCAGGCACACCGACACTTAGAATCTAG 4444111 36 100.0 39 .................................... TCCGGGAGCGCCGCGCCGAAACTGGCGCCCGCCGACCAC 4444186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 100.0 39 GCCGCAATGGAGTCCGGCGCTGTGCGCCGGAGGCAC # Left flank : GGCCACCGGTCTGACCAACCTGCCCATGCGCGGATTCGCCCACAACCAGATCTGGGTCGCGATCGTCGCGTTGGCGGTCGAGCTGACCGCATGGACCCAGATACTCGCCCTCACCGGCCACCACGCCCGCAGATGGGAGCCCAAACGCCTGCGGCTACGCCTGTTCTCCATCGCCGGGCGCATCGCCTGCCACGCCAGGCGGGTCCACCTCCGGCTGGCCGGCCACGCGCCCTGGGCTGATCTGGTCCTGACCGCCTACCAGCGCCTACACGACCTACCGCGACTGGCTTGACCAGCCAGAACCCTGTTCCTACGAACAACCAGCATCACCATCGGGCAGTGGAACCCGGCGACACCCGGTCGACAGCGGGCCATCTTGGCCATCCCGAACAACGGAAGGAGCACGCGCAACAGCCACTGGTCGCGGTCTCAAGCCCGGCCGTCACCCACACGAAAGATCCGGGCTAGGCGGGAGAACCGCCTGTCGCCTCGGTTCCGGC # Right flank : CGGCTCGCTGGTTTTGCGGGTCGTGACCTGGGATTTTACTCCAGGATGCGAGCGGTCGTCGGTGCAGGCTGTGAATTGGCTGGGGTGTGGCTGGGCTGGGGTGGGTTTTGGGGGTCTGATCTGTGTGCGAGCGGTGGCTGGGGGTTGGGTGGGTACTGGACCGCTCGCGGTTCATACGATCTTGGCGCGAGGGTTCGGAAGCGTGCGGGGTTTTCCGAGGGTATGGATGGGTGGCGCGGACGGGATCGGGCCGAGGTCGATGTGGATGATGCTGTCGTGAGCCAGGTCGATGACGTCGGTGGCGCGTGATTCGAGTTCGGCTCGTTCGGCGGGGGACAGGTCGCAGAGGAAGACCGAGTATTGGAGGCGTTCGCCGTGGTCTTCCATGAGTGTGCAGACTCGTCTGAGCCTTGCGGGGTCGGCGATGTCGTAGGCGATGACGTATCGATGCCGGGCCATGGGTTTTCACCTGGTGATCATTGGCTTGTATTCGGGAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCGCTGTGCGCCGGAGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.30,-15.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 5381723-5379679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000002.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5381722 28 100.0 33 ............................ AGTGACCAGACACCCCGCGTGCCCGACATGCGA 5381661 28 100.0 33 ............................ CGAGGACGCGCGGCCAGTATCGTCGCCGTTCCG 5381600 28 100.0 33 ............................ CGGTCTGCGTCGCCGCGTAGCCCGAGGACTGGA 5381539 28 100.0 33 ............................ GTTGTGGGTCGGGTCCGGGAAACGGGCCCAGGT 5381478 28 100.0 33 ............................ GAGCGGGCGACGTCCGCTGACGTGGACACCACC 5381417 28 100.0 33 ............................ TGGCCAGCGGGGCGTCGAGCACCCGCGCCAGCT 5381356 28 100.0 33 ............................ GTTCCCCTTCTCGATCAGCCATGGCGGGGTGCC 5381295 28 100.0 33 ............................ CGAGGGTGGCTACCAGGCCGAGCCGCCGCACCG 5381234 28 100.0 33 ............................ CGCCACCGCGCACGCACCACCCCCACCAAACGC 5381173 28 100.0 33 ............................ CTCGTACTCGATGCCGTCCCGCTGCTCCGGTTT 5381112 28 100.0 33 ............................ GCTGGCGTGTGTCGTCACGGGCGAAGGCGGCCA 5381051 28 100.0 33 ............................ TCCGTCCAGTGCCGCTCGATCAGGGCCCAGTCG 5380990 28 100.0 33 ............................ TTGTGCGAGCACGGCCCCGTTCTCGGCCTCGAA 5380929 28 100.0 34 ............................ GTCGGCTTCGAGGACGAGGCCGCCTTCGCCGGCG 5380867 28 100.0 33 ............................ CGGTTCCCGGTGCTGGCCCGGGTCCCAGCACCG 5380806 28 100.0 33 ............................ CGGATCGCGGTGCGCGAGATCAAGCCGGACATG 5380745 28 100.0 34 ............................ GTCGGCTTCGAGGACGAGGCCGCCTTCGCCGGCG 5380683 28 100.0 33 ............................ CGGTTCCCGGTGCTGGCCCGGGTCCCAGCACCG 5380622 28 100.0 33 ............................ CGGATCGCGGTGCGCGAGATCAAGCCGGACATG 5380561 28 100.0 33 ............................ CAAACCGTGCACACTCGGCGGTAGCGCGGGCGA 5380500 28 100.0 33 ............................ GCACCCCCTCTCGGCCCGGCACCCGCCGAGCCC 5380439 28 100.0 33 ............................ GGCGCGGTCAGCAGGATGCCGGTCAGGCCGCCG 5380378 28 100.0 33 ............................ GCCCGAGCGCGTGCCCTTCTACCGCGAGCTGAT 5380317 28 100.0 33 ............................ GGTGCTCGACGAGGACGACGTGCTCTTCGCCCG 5380256 28 100.0 33 ............................ CCGCTCCCGGTGATCCAGTGCGTAGTTCAGGCA 5380195 28 100.0 33 ............................ CGGCCGCGAAGTCAAGAGAAGCGGGCATGTTCA 5380134 28 100.0 33 ............................ ACGGACTTCGCGCCCCTAGGTCCCGATACCCAG 5380073 28 96.4 33 .....................G...... TCGGTGGGCTTCAGCAGAAGTCCTCAGCCAGGA 5380012 28 96.4 33 .....................G...... GCCTGGGACTGCGCGAACGCCGCAGCCGCTTCG 5379951 28 96.4 33 .....................G...... GCCGCTTCATATCGAAGGAGACGACGAAGAACA 5379890 28 96.4 33 .....................G...... CGGTGGCCTTGGTGGCCGGCACGTCCCACAGCA 5379829 28 96.4 34 .....................G...... TGGCGGCGCCGCGCGCCACTGCTCGACGCGCTGC 5379767 28 96.4 33 .....................G...... TGGCCAGACGCGCTCGCGATCGTCCCGCACCGC 5379706 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================== ================== 34 28 99.3 33 GTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACGATCCGGGGATCGCCGCCGCACTGCGCCGGATCCACGAGCACCCGCAGCACCCGTGGAACGTGGCGGGCCTCAGCGAGATCGCCGGGCTGCCGCGGACCGCGTTCACCCGGCGATTCACCGCCCAGGTCGGCCAGCCGCAGATGAGCTACCTCACCGGCTGGCGGCTCGGCCGCGGCGCCCGCCTGCTCCGCGAGACCGACGCACCGTTGGCGGCGATCGCCCGGCAGATCGGGTACTCGACGGAGTTCGCGTTCTCCGGGGCGTTCCGGCGGCATTACGGGGTGGCGCCCGGGCGGTTTCGGCGGACTGCAGGGCAGGTTGCGGCGGTGGTTGAGTAGGGCGGTGGGTGTCTGGTGGGGAGGTCGCTTCGGTGGGGTGGCTGTGGGTGGGCCGGGTGGGGCGCTGCCAGGGCGAGGCTGGCCGGTTCGTGCTGAGCGGGGATGCAAAGTGAAGCAAAACTGGGCACGGCGGGGGTAAACTTGCAGGTCAAGAAGTGT # Right flank : CGACCCCGGCCGCCAGATCCGCGAGCCTTCCTGCGAGACCGGCGCATCACGACCCGGGTGGACCGAGCCGAGGCGCCCGAGTCGCCCGCCAAACACCGCGCCCCGGCAACGCGCCAGCGTTCATCGGCTGTGAAGGGAACCTTCACGGACTCAGCGTCCGTGAAGGTTCCCTTCACAGCCTTGATACCCCCGCACAGAAGCCGAGCGGAGCGGCGGAGCCGGGGCAACCCCAGATCAGCAGTGCCGGAAGTCCGGCTTCCGCTTCTCCGTGAAGGCCGCCATCCCCTCCTTCTGATCCTCCGTAGCGAACAGCGCGTGAAACACCCGCCGCTCGAACAACACCCCCTCAGCCAGACTGCTCTCGAAGGAACGGTTGACCGCTTCCTTCGCAGTCCGCGCCGCGACGAGGGACATCGAAGCGATCTTCGCGGCAACCTCGATCGCTTCGGCGCGCAGCTGCTCGTTCGGGACCACCCGGGAGACCAGGCCGCAGCGCTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5387159-5385719 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDJK01000002.1 Amycolatopsis sulphurea strain DSM 46092 Ga0074782_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5387158 29 100.0 32 ............................. AGGCCGCGCCGAACGGGCGGCCGCCGGCGAGT 5387097 29 96.6 32 ............................T GACCGCCCGATCCAGGACCGCGCGCATGCTGC 5387036 29 96.6 32 ............................G GTCACAGGGCGTGCGCCGCCCGCCGTGTCCGT C [5387020] 5386974 29 96.6 32 ............................G CCGCCCCACTCGATTGGGCCGCCGTGGTGGCG 5386913 29 96.6 32 ............................G GTCTGCTCCACCTCAGGCTGCCCCGAGCTGGT 5386852 29 96.6 33 ............................T GAGATCCCGCGAGCTGGCTCAACGCATACCCGC 5386790 29 100.0 32 ............................. GCTTCGTCTGTGAGTTCGTGCGCCAGCCCGTC 5386729 29 100.0 32 ............................. TGGACATGGCGTTCACTCGGGGCTCCCCTCAC 5386668 29 100.0 31 ............................. TCTTCCCCTGGCCCCGGGCGCGCTACCTGTG 5386608 29 100.0 32 ............................. AGGTCGCCGGTCGCGTCGTCGCTCTCGGTGGC 5386547 29 100.0 32 ............................. TCGGGCGGCACGTTCAGCGCTGCGCAGATGGA 5386486 29 100.0 32 ............................. GTGATCGGGTTACCCAACCGCGACTGCGCCGA 5386425 29 93.1 32 .......................A....G CTGCGCCGACGGGTGGCCCCGCGCCGCCAAAC 5386364 29 96.6 32 ............................G TTCCGCGGGCACAAGGCTGGCGCGGTGAAATT 5386303 29 100.0 32 ............................. ATGATCTGGGCATCGAGGCCCGAACCGGTTGC 5386242 29 96.6 32 .................A........... TCCTGCTCACCCGGCTGACCGCCGAACTTCCC 5386181 29 100.0 26 ............................. AGCCGCTCCTGAGCAAGTCCTTGCGC 5386125 28 96.6 0 ............................- - Deletion [5386098] 5386098 17 55.2 32 ------------................T CCTCCGCCGCCACTCCCGCGCCCAGCAGGTCA 5386049 29 96.6 32 .............C............... ACCTCATCAACGGCAGCACCACCGACCCATTT 5385988 28 96.6 29 .....................-....... ACCGCGAACGCGTCCGCGATCCGCCGCCG 5385931 29 100.0 32 ............................. CAGGTGTCCGGGTCGACCTGCGCGCACAAACC 5385870 29 93.1 32 ........G...................G ACGCCGCGACCCGGCATCCCGGCGACCTCCTC 5385809 29 93.1 32 ..........T.T................ GCCCGGAAGGGAACCCCGTCCAAAGGGCTGAT 5385748 29 96.6 0 ..............A.............. | A [5385730] ========== ====== ====== ====== ============================= ================================= ================== 25 29 95.9 30 GTCGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : AACTACGACGACCGGGACGAGGACCTGTGACCGTCCTCGTCATCGCCGCCTGCCCCGCCGGACTCCGCGGACACCTCACCCGATGGCTCCTCGAAATCTCACCCGGCGTATTCATCGGCACCATCACCACCCGCGTCCGTGAACTCTTGTGGAACCGGGTCGTCGAGATGGTCAAGAACGGCCGGGCCATCATGGTTTTTCACGCGGACAACGAACAAGGCATGGATTTTCACGTCCACAACCACACCTGGCACCCCACTGACTATGACGGCATCCAGCTCATGCTCCGCCCCACCACACCGCCGGCCGATAGTGGATCCGACACCACCCCCGGCGCCGCGCCTACTCGAAGCTGGAGCACCGCCGGACGCCTCCGCCGCTACGGGCGGCGCTGACCGACCCGACCCCGCGGCGGCCCCCGTTGGCAGAGTCGGCGAAGGGATCGAAGCAAAGTGAAGCAAAACTAGGCACCTCGTGGGTAAACTCGCAGGTCAAGAAGT # Right flank : CGAAGTCATTTGCACGGCCGTCGGGCGGCGTCATTAGCCCGTCTTGCCCCGGGTACGCGGCGAACCCGGTCCCGGCTCAGAGTCCGAGGTCCAGCCGCAAAGCCGTGGCCAGCTTGCGGATCCGGTCTGCGTCGAGCCGTCCGCAACGGCGGCCGATGCGCTCGACAGCCACCGTCCGGACCTGCTCCGCCTGTGCTTTGGAATCGCAATGCAGCCCCGTTCCGTCCGCAGGCAACAGCACTTGAAACGGCTACACACTGTCCATATTGGACGTCACAGGGACGACCATCGCCACGCCCCGCACGAGCCGCTCGGCCGTCGCGTTCGCCGTATCGTTTGCTGACGATCACCGCGGGCCGGGTCTTGCTGGCCTCCGAACCCCGCGCCGGGTCCAGATTCACGAACCGGATTCACCGCGTCGCACGGATCACGCCTTCAGGCCGTCGCCGACGATCGCGTCCCACGCATCAGCCTCACCCGACGTGTCCCAGGACCCCCAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //