Array 1 890110-895591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009514.1 Methanosarcina mazei C16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 890110 37 100.0 34 ..................................... TTGTCAATTCCGTAAAAAACGTTAAACGAAAATG 890181 37 100.0 38 ..................................... AAAAGGAACTGAAGAAGGAAAAGCAGATTCCCTTACTT 890256 37 100.0 34 ..................................... ATATTATGCCCGTTGAATGTGATTGTTTCATTGT 890327 37 100.0 35 ..................................... ATTTTCACTAACCAACAGTGTAAAATCAAAGACGA 890399 37 100.0 37 ..................................... GCAGTTAGAGAATGGACTTGTCCTTCATGTAACACTT 890473 37 100.0 35 ..................................... ATAACCGTAGAGTCCGAATATATATCGACTTTCAG 890545 37 100.0 38 ..................................... TCATAAATGGAATTAACATTACAGGTGCTGGAACCTGG 890620 37 100.0 37 ..................................... AGGTTAAGGGACTTTCGACAGCAGGAAGCTCTTTTGA 890694 37 100.0 34 ..................................... ACACTCGCGAGCAGGGAATAACCATTACCGAGAT 890765 37 100.0 36 ..................................... TGGTCAAACTGTTGGAGATGCTGAAAGAGCGTAAAA 890838 37 100.0 37 ..................................... AAACTAACGCTAAAACTAAATCTAATTAATATTGAAC 890912 37 100.0 36 ..................................... TGGAAAAATTTTTGTCCTCGGTACTCTCGTCCTTTT 890985 37 100.0 35 ..................................... ACAATCTCTTTTTGCATCATGCCCTGCAAATATAG 891057 37 100.0 35 ..................................... GTCTTTCTCTTTCTGCTTCAGTCACATCTGTAATT 891129 37 100.0 35 ..................................... CCTGACCCAGACTTTCCAAACAGCAAAGCATTAGA 891201 37 100.0 36 ..................................... CCCATCCAAACATCCCCGCTTTTTTGGACTGTTATT 891274 37 100.0 36 ..................................... ACTTTGAATGTGTAAATAGTAAATAGTGAAAGATTA 891347 37 100.0 35 ..................................... CAATGCTTCTGGAAAGCATCGGGCTTTTAATTGGC 891419 37 100.0 34 ..................................... TAAGTGTTAATGAGGGGGCAGTACAGGGAAACGA 891490 37 100.0 34 ..................................... TATCAGAGCAATTCTTATTTTCGGGGCTGCACTT 891561 37 100.0 37 ..................................... ACAAAACACGTATAACTATTTTATACTCTTCTTCAGA 891635 37 100.0 37 ..................................... GGAATCATTTTTACCGTTATCGTGGTCCTGGTGCTCT 891709 37 100.0 35 ..................................... TCGAGGTGAACACTGAAAAACTGAAAGAATATTGT 891781 37 100.0 37 ..................................... TGCTGTCGGGCATGAAGCAGAACTTAGAACAGATCTT 891855 37 100.0 35 ..................................... GTAACTTCTCGGTTTTTTTCACATTCTCCCCGTAA 891927 37 100.0 34 ..................................... ATTACACTCTTCGATCTAATGAAGAATCAGAAAG 891998 37 100.0 34 ..................................... TGACTCAGGATATTCATGTTAAAAATATTGAAAG 892069 37 100.0 36 ..................................... TGAAAAAACTCGAAACTGAAATGGGGAAGGCGTTAT 892142 37 100.0 34 ..................................... ACATGGTTATGGAAAGCTTCGATGTCCCTGACGC 892213 37 100.0 37 ..................................... ACACGACATCGTTTGGAGGGATCCATAGCACATAATT 892287 37 100.0 34 ..................................... TTGCAAGGGCTTAAAGGTGATCTTGTATGGTAGG 892358 37 100.0 36 ..................................... TTTTCCCTCCAACGTTTTAAGGGGCTTACTGCCCCT 892431 37 100.0 35 ..................................... TCATGTGGCTATATTCAACATCAAATTCCTTTTTC 892503 37 100.0 36 ..................................... AATCTCTAAAAATCCATATCTAACATGCAGCTATAT 892576 37 100.0 34 ..................................... TCCGCCTCACTCGCTTGGCCTTATGATGATTACA 892647 37 100.0 33 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGA 892717 37 100.0 37 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAAAA 892791 37 100.0 34 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGA 892862 37 100.0 36 ..................................... AAAACAATATCATAACGAACACACAGAAAAGAAACA 892935 37 100.0 37 ..................................... ATTGGTCAGTCCGATACTGAAATAGAAAATATTGAAA 893009 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 893082 37 100.0 37 ..................................... TAGTAGTATGACAATATAGAGTATGTACTAGGGCGGT 893156 37 100.0 35 ..................................... TATACATTGTTAGCGTTAATAGAATCTATGGCAGA 893228 37 100.0 35 ..................................... TTATTATGTCAGTACATCCCTTCCTTAGCACCATC 893300 37 100.0 36 ..................................... TGCACATGTTTTCAAAGACACCATGAATCCATTGAC 893373 37 100.0 34 ..................................... TAGTAGTATGACTAATACTATGTACTGATAAAAG 893444 37 100.0 35 ..................................... GATTTTTCTACCCCTAGCTGCCTCGACTCTCCAAT 893516 37 100.0 38 ..................................... CGCCAAGCTGCACGGCATTGCATTAGAACCTCTTGTAG 893591 37 100.0 34 ..................................... AAGATCAGAACAGGAGAAATCTTAAATGGTAGGA 893662 37 100.0 37 ..................................... ATTCTATCTGCTTCTTCAGTGTTTCCATTCTTAAGCT 893736 37 100.0 36 ..................................... TCAATCATAAATATCACCTCATCCAAGAATCAAACT 893809 37 100.0 35 ..................................... ATACCCTCCTTCTCCTTACTGTATCGAATGAGTTA 893881 37 100.0 35 ..................................... ATTTCGCACCTGCCTTAGAAGTCACGTTTTTATAT 893953 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 894025 37 100.0 36 ..................................... ATGTAATGAGGGATATCTATATCAGAGCAATTCTGA 894098 37 100.0 36 ..................................... GCTTCCTTTTCCTCAGTCTCTTCTATTTCCTGCTGT 894171 37 100.0 34 ..................................... TAAACCATGACCTGGGAAAACGAAAACACTTACA 894242 37 100.0 37 ..................................... TGTAGATGGAGTACTTGAAGGAACCGCAACGTCTGCA 894316 37 100.0 35 ..................................... CGATAGTGGCAGACGGAATAATGAGAGCGGTAAAT 894388 37 100.0 36 ..................................... TGGTCTGGATCGAAGATAAAATCATGTATGACGGGA 894461 37 100.0 40 ..................................... CAGAAACATAAGCAAACGTTTCCCCTAATTCTATTTGATT 894538 37 100.0 37 ..................................... TTACATTGCCGTTGATATCGATCCGCGTGAGAGTAGG 894612 37 100.0 33 ..................................... AGCGCGGGCATCCTGATATGACCGCAGGAGAAG 894682 37 97.3 35 .............G....................... TGCGAGAGTGTTATGGCGACGATCAAAAGCGAAAG 894754 37 100.0 35 ..................................... TTGCCTCAATAGCTACTATCCGCGACCATATGAAC 894826 37 100.0 38 ..................................... ATTCCCGTTCCGGCATGGATACGGGATGAGCTTAATTT 894901 37 100.0 36 ..................................... TGAACTACGCGGCGGCGGTTCACGAAATCCCGATGA 894974 37 100.0 34 ..................................... AAATTATAAAGTTAACAGCGTTAACTTTATAATA 895045 37 100.0 37 ..................................... TGACAAGTCAGTTATCCAGGCAAGCAGAAAACTCCGT 895119 37 100.0 35 ..................................... TCAGGGGCGGTGAAAGGAGCAACCGGGGCAAATCA 895191 37 100.0 34 ..................................... TTAGAAGCGAAATAGACAAGCTCAGGGACGGTTC 895262 37 100.0 35 ..................................... TTCAAGAAGTTGGAAAAGAAAATTTGAATATGGGT 895334 37 100.0 38 ..................................... ACTGAATCCCTGATACTTTTGAGCTCTTTTTTCATGGT 895409 37 100.0 35 ..................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 895481 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 895555 36 75.7 0 .....T.....T..........G.-GCCT.......A | C [895587] ========== ====== ====== ====== ===================================== ======================================== ================== 76 37 99.6 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCTGAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : AGTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 3296823-3299881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009514.1 Methanosarcina mazei C16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 3296823 37 97.3 34 .....T............................... TTACAATTGATGTTTCAGGCCTTGAAGATGGCGT 3296894 37 97.3 38 .....T............................... AAATGTGATACAAATAGAGATAGATTAGATAAGTATAA 3296969 37 97.3 35 .....T............................... GATAATACCAAGCTGACAAGCTCTTAGAACTGCGA 3297041 37 97.3 37 .....T............................... GTGGAAGCGGTAAATCGGTAGACCTGCTGAAAGATAA 3297115 37 97.3 35 .....T............................... TTATTCCCTTGTATAGCTCACGCGGGAACCGTAGA 3297187 37 97.3 36 .....T............................... TAATGAGATTGTTACTATTATAAATTAATTACAATA 3297260 37 97.3 36 .....T............................... GGAAATATCAGGAAGCAAATAGGAAGCTTGAAGAGA 3297333 37 97.3 36 .....T............................... ACAAAGAAACCGGGAAGGACGAAACCCCAAAATATC 3297406 37 97.3 35 .....T............................... AAACTCATGACCGCCATGCTCGGGGATGAAAACAC 3297478 37 97.3 37 .....T............................... CTATCCTTTTGATGGATATAATCAATATGCGCCTTAA 3297552 37 97.3 36 .....T............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 3297625 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 3297697 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 3297769 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 3297841 37 100.0 34 ..................................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 3297912 37 100.0 35 ..................................... TTGAAAAGGGTATTATTCGAAATATGGATTTTGGT 3297984 37 100.0 37 ..................................... TTCTCAGGATATTCAGAATCCAACTCTAGCAGGTCAT 3298058 37 100.0 36 ..................................... ACTTTAAGGCGGGAAGTCCCCTTCCTCGCCATCAGG 3298131 37 100.0 34 ..................................... AATCTGAAGTGCCTCAGCTTCGGTATGATGTTGA 3298202 37 100.0 34 ..................................... TGACTAAAATGCTTGACGGAATTATATCGGATTA 3298273 37 100.0 35 ..................................... ATGTCGTTCCTGCCATTGACCCCTTGACACCTGAG 3298345 37 100.0 37 ..................................... TTTTGTGTCCTGATTCTGTCGTTAAAGTGTCGGCAAT 3298419 37 100.0 35 ..................................... TTAATCCACTCAATAGAAACCACATCTGGAAACAT 3298491 37 100.0 34 ..................................... CAGAGCTTATCAAAGGATACGCAGAAGGGAAATA 3298562 37 100.0 36 ..................................... ATCCAGGGATGGGCTAATGATATAGGCGTACTCATG 3298635 37 100.0 38 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTTCA 3298710 37 100.0 38 ..................................... TCTTTTGAGACTCGCGGAAAATGCTTCAGCTGGGGACG 3298785 37 100.0 36 ..................................... TTTTACCGGGGATGTGACAGTCAGGGAATACGGCAT 3298858 37 100.0 35 ..................................... TGTAAATGGTACACTCTCTGAGGAAACGGTAACAA 3298930 37 100.0 38 ..................................... TTTTGCACCTACGCTTGAAAATTTAATAGATTATGTAA 3299005 37 100.0 36 ..................................... TTATAGAGAGCTTTTCTTCTGTATTTCACAACTAAG 3299078 37 100.0 41 ..................................... ATTGTGCACGTTTTTCTTTGCGTATTCGGTTTTTGCTCGGT 3299156 37 100.0 34 ..................................... TTAGAATTAAATATTCACCAAAGTTTAGTTTTTT 3299227 37 100.0 35 ..................................... TGGCAACAACAAAACAGAAACAGTAAAAAGCAAAA 3299299 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 3299371 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 3299446 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 3299517 37 94.6 71 ...................................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 3299625 37 83.8 35 TG.......T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [3299630] 3299698 37 86.5 34 .G.......T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [3299705] 3299770 37 83.8 36 GG.......T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [3299775] 3299844 37 81.1 0 TG.......T.GCT......................G | A [3299849] ========== ====== ====== ====== ===================================== ======================================================================= ================== 42 37 97.6 37 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 3314776-3320410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009514.1 Methanosarcina mazei C16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3314776 37 100.0 35 ..................................... AGCTATAACTTTTTCAGGGAAATCCTTTGGAAAAG 3314848 37 100.0 35 ..................................... TTATTTTACGGGTTCCACATGAACATGGATAGTAC 3314920 37 100.0 35 ..................................... CCAAAATTTGTAAACAGCGTTAACATAATATTCAA 3314992 37 100.0 34 ..................................... TTGCAAGGGCTTAAAGGTGATCTTGTATGGTAGG 3315063 37 100.0 35 ..................................... CCGCATATGGCTCTCTAAGATACAAGCATATTCCT 3315135 37 100.0 36 ..................................... CTATCATGCTGACACACCAAGAGCCCCGCAAACCGC 3315208 37 100.0 35 ..................................... AGCAGTGTCGTTATTTCTGTACCTACATAAATGGA 3315280 37 100.0 37 ..................................... ACAGACCCATCTGGGCGAATAGAATCAACCTTGAATC 3315354 37 100.0 37 ..................................... TATTGATGGTGTGGCGTATATCCCAGGGGTAGACGCT 3315428 37 100.0 36 ..................................... TGCACACATTTTCAAAGACACCATGAATCAAGTGAC 3315501 37 100.0 34 ..................................... CAATAATGCCCTAAAAGTATATATACTTTTAAGG 3315572 37 100.0 36 ..................................... CAATGACCTTGATGATTTTGAACAGGCAGCGATCTT 3315645 37 100.0 36 ..................................... TAATCTCCTTACACTTCCAACCATCACCAGGGACGG 3315718 37 100.0 38 ..................................... GCTTTAGCTGTAACATGGATTCCAGGTGTTTCTGAATT 3315793 37 100.0 35 ..................................... GACAGGTCTTTGACTTCGTGTTTCATATTAGCATC 3315865 37 100.0 36 ..................................... ACAAGAGTATTCCACCGAGGATAACCCCAAGATCTG 3315938 37 100.0 34 ..................................... TCAGGTACGTAGTCCGTGAATTCCTTAGCTTCAT 3316009 37 100.0 35 ..................................... CAAGCTGCAGGTTATCCCCAGAGACTTCTATCAAG 3316081 37 100.0 35 ..................................... TTTATTTCTGAAGTTCTAAGCTGGAACCACTGGAA 3316153 37 100.0 37 ..................................... TCATCCCGTTTTTCAAACTCCCTGCCGGATTCGAACC 3316227 37 100.0 34 ..................................... ACCTTAATCTTCCAGTTGATGATGATGTTCTTAT 3316298 37 100.0 37 ..................................... ACTATCTCAGAAACCACAGAATTCAGCACAATTTCAC 3316372 37 100.0 34 ..................................... ATAGAACGCGCACAGGAGGCTGAAAAACGTGGAA 3316443 37 100.0 36 ..................................... TTAGTTTTACAGTGTGGCCGTTGAATGTGATTGTTT 3316516 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 3316588 37 100.0 33 ..................................... CTCAAATCCATTATATTGTGATTTACGAGATAT 3316658 37 100.0 37 ..................................... CAAATTCATCTTATTTTCCTTCTTTGTGTAGTAAGTA 3316732 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGATA 3316804 37 100.0 37 ..................................... GTGCAACAACTGATGCGTATGAAGAAGGTTATAAAGA 3316878 37 100.0 35 ..................................... ACATGAATATCCTGAGTCATAAATCCAATTTTTTC 3316950 37 100.0 36 ..................................... CAACTCTAGCGTTTGCGCCTGGGTAGTTTCTGTTAG 3317023 37 100.0 36 ..................................... ATGCTAAAATTGATGACGACAGAACTTATACTCAAA 3317096 37 100.0 35 ..................................... CTTTTACACCGTTCAGCCAGTGGTCTTCTACAGGG 3317168 37 100.0 36 ..................................... AGGTGTGGGGGTATTGGTAAGTGCCTCCTAAAAAAA 3317241 37 100.0 36 ..................................... AGTTCCATGGGCAATATTTCTAATCCGGTTTCTTCC 3317314 37 100.0 35 ..................................... ACTCATTCGCTTTCTGTTCAAAAAACTCTTTCTTT 3317386 37 100.0 33 ..................................... TTGAGAAAGATTCTCGTTCATAGTCCAGAAGTG 3317456 37 100.0 36 ..................................... CGCAGAGCATATAGACCGTTACGGCGTGAATTTGGA 3317529 37 100.0 37 ..................................... TTACAGGATCCTAAAATCGACTCTGCTGATACCGGTT 3317603 37 100.0 37 ..................................... ATTTTTCCAATTGGAGATTCTACGCTTTTCCTTTTTT 3317677 37 100.0 37 ..................................... TTACCCAATGAAAAAATAGTCCATATCGGATTTAGAC 3317751 37 100.0 35 ..................................... AGTACATCATCGACAATAGAAACTATAAAGCCAGC 3317823 37 100.0 34 ..................................... CCATGTTTCTAAGCCCGCATTTTTCGCATAGAAC 3317894 37 100.0 37 ..................................... TAAAACAGGTGCAGCCGTTAAACGTGCTTTCAAAGAG 3317968 37 100.0 36 ..................................... TCAATGGGCAATAATCCGGCCAGCAAGGCTCAGATA 3318041 37 100.0 34 ..................................... TTTTCGGTTCAAAGTGCAACCCGGACGAAGAAGA 3318112 37 100.0 36 ..................................... TATATCAATCTCAAAGTGACCTTTGTTTCCTGTGGA 3318185 37 100.0 35 ..................................... TATATGTTGACTGCGTATACTTACTTGCTAAGATG 3318257 37 100.0 37 ..................................... TTTGGATTGGCTTAATTCCCTTCTCTGCATGAAGAAG 3318331 37 100.0 33 ..................................... TTGTAAGAAGAGAGGCTTGAAAGAAGTTGAGTA 3318401 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 3318473 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 3318545 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 3318619 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 3318691 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 3318763 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 3318837 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 3318910 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 3318984 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 3319058 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 3319130 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 3319205 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 3319277 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 3319348 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 3319420 37 100.0 38 ..................................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 3319495 37 100.0 37 ..................................... TTTTATATATTAATGGAATAAATGAGTCGAGTGGTAC 3319569 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 3319640 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 3319714 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 3319789 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 3319865 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 3319936 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 3320011 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 3320082 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 3320155 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 3320227 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 3320299 37 75.7 37 TG...A...T..CT....C.......G.........T GCAGACGAAAAACGCAAATAAGAGAACAGACAAAATC A [3320304] 3320374 37 86.5 0 .....AT....................A.....G..T | ========== ====== ====== ====== ===================================== ======================================= ================== 78 37 99.2 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCGGTGCCGTATGGGATACCGTAAAAGAGGATATTCCTGCTCTCAAAGAAGAAATCACTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCAGAATATTGCCCCTCTTTCTGATCCTGCCTAGGGACGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGTCAAATAACGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATACGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //