Array 1 4321-473 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWF01000146.1 Vibrio sp. V28_P6S34P95 scaffold60_size19818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4320 32 100.0 34 ................................ AAGTCGGACTACCTAAGTCTAGAACAACCCGCCA 4254 32 100.0 34 ................................ TAACCGGACAGTGACATGAAAAAAAACCAACTCG 4188 32 100.0 35 ................................ AACACGTACCACTGTCGCTGCTCATCATCGATAAC 4121 32 100.0 33 ................................ TGGCCATGTCCCAATGACTTGCGGCTTGTAGCA 4056 32 100.0 33 ................................ CAGATTGGATCGCATCTTGCCCGTAAACCGTTT 3991 32 100.0 34 ................................ AAGCTCAATATCATCAGAAAAGTAATCTGTAGCG 3925 32 100.0 34 ................................ TGTAAAAAAGAGTATGAATTATGGGAAGTCAACT 3859 32 100.0 34 ................................ TTGAACAATCCGCGCTCTGTGGCCAGCTATCCAG 3793 32 100.0 34 ................................ GCTTGCGAGGTGTTTTTTGTGTTCGGAGGGGATG 3727 32 100.0 34 ................................ CAGAAGGCTTTAAGCCTGCCAGCCTAAAGCCATT 3661 32 100.0 34 ................................ TGGGTCGTGAAGGCTCTAACGTTCGGGAAGATTA 3595 32 100.0 34 ................................ TGGTGTTGTTCGCCTGCCGCTATCTAACCCGCCA 3529 32 100.0 34 ................................ ATCTGACGCATCACATCGAGCATCCAGTAAAAGT 3463 32 100.0 34 ................................ TCTGGTGTCGCTATCGTTCAGATCGCACAAATAG 3397 32 100.0 34 ................................ ATTAATTTTAGGCGCAGCAAAGCTTGCGCTCGAT 3331 32 100.0 34 ................................ CAATACCAACTATAAAGCCGTCGAAGTGCTTGTA 3265 32 100.0 33 ................................ ATCTAAGCGTAGGAGCATAGACGATGAATGACC 3200 32 100.0 33 ................................ AGTATCAAGAATCAGCAAATCCAGCGTGATTTT 3135 32 100.0 33 ................................ GCGCTAGGCACGCGCCCAATACCATCGTGCGCC 3070 32 100.0 35 ................................ ATCATCGATTTGATAGACAGTTTCATCCGCTCCAT 3003 32 100.0 33 ................................ TTTGTAACGACGCGCCGCTTGATGAGCGTCATC 2938 32 100.0 35 ................................ ACATGTGCCTAGATCGGCAGGGTGAATAATAAAAT 2871 32 100.0 33 ................................ AAAGAAATGATGCGCTTTTGTTGAAAGGGTTTC 2806 32 100.0 33 ................................ TAGCTCGTTGAAGCTGTAAATTCTGAGGCCACC 2741 32 100.0 34 ................................ TAAAACCAATATAAGGCGTCAGCAAACACCTAAG 2675 32 100.0 34 ................................ CTTTAAACCTAGCCAACCTTTGCCCCTGTTGTAT 2609 32 100.0 33 ................................ CAGCAGTAAGGCTAATAAGGAAATAAGCATGTG 2544 32 100.0 34 ................................ AGCTTGAAAGCCGGAACTCGCTTTGTTGAATCCA 2478 32 100.0 33 ................................ AACAAACTCAAACGCAAGGTGACGCTAAATCAC 2413 32 100.0 34 ................................ AAAACCTTGAGGTTTACTGCTCCGCTTACGATCA 2347 32 100.0 34 ................................ GAATTTGCTGGCCAACATTCACTTTAGGATACAG 2281 32 100.0 34 ................................ TGTTTAAGACGCTGAATTGCAGAAAGTCCATTTA 2215 32 100.0 33 ................................ CCAAGATGCTGGCTGTACAAGCGAGTTCATTTC 2150 32 100.0 34 ................................ TCAAACAACGCAAGAGTCCAAGTTCGTTTAGCAT 2084 32 100.0 33 ................................ TTCAGATCACGCTCAAGATAGTAATCGCACTCA 2019 32 100.0 34 ................................ AATCGTGACCACATAACGCCACTGCTTGTCTGGG 1953 32 100.0 35 ................................ AAACCCCAAGAACCGGTACAAGACTGGTGCAAATT 1886 32 100.0 34 ................................ CCAAATGGTTATAAACAAGGGTATTAAAGTCAAC 1820 32 100.0 34 ................................ CTGTTATTTTCTCTTGGTTCACTTTAAAAAAAGG 1754 32 100.0 33 ................................ GCTTGCAGTTGTTCAACTTTTTCAGAAAGCGGC 1689 32 100.0 35 ................................ TAGAGAGTCGTAACAAGCCAAGGCTTGCACGATAA 1622 32 100.0 34 ................................ AAATTATATATTAGGAGGCCCATAATGGGTTGTA 1556 32 100.0 34 ................................ TGCAGGTTCTATTTTGGTATAGACGTGGAATTCA 1490 32 100.0 34 ................................ AAGGCCAAGTTTGCGCGCCGCGTTTTCAACGCGT 1424 32 100.0 33 ................................ CTTTGACTAGGTTGGTTAGTAGCCCTTCGGTAG 1359 32 100.0 33 ................................ TCTAGCGCTTCGCCACTGAAATAGTACGTTGCG 1294 32 100.0 34 ................................ ACTTGCTCGCCATTCGATGTCCACACCTGGAATC 1228 32 100.0 34 ................................ TAATAATGCCGTTGAATTGCTTGAAATAAAACTC 1162 32 100.0 34 ................................ TCGACTATTAAGTTGATTATAAAAGAGATAATTA 1096 32 100.0 33 ................................ TTGCAGCAATTTACCCGTTTCTGCCTGAGCTTT 1031 32 100.0 33 ................................ ACAGGATCGAGCGGCAGTATCAGAGTTAGCGCA 966 32 100.0 33 ................................ CATCTGGCTCTCCGGAGCAGGGATTGCGTGTGA 901 32 100.0 36 ................................ ACGCTCTCTAGCTCGCTCTAAACGCCAGCCCAGTAA 833 32 100.0 34 ................................ TCGACTTGCAGCTGGCGAATAGTCCAGTAGCCCC 767 32 100.0 34 ................................ TCAACACGAGCACGTTTTGAAGATGAATGGAATC 701 32 100.0 33 ................................ AGCAGAGCCAGGCAACGCGAGAGCAAGAAAGCA 636 32 100.0 34 ................................ ACCCCAACCGCGCTGCTAACCAGCTTTTGCTGCC 570 32 100.0 34 ................................ ATCCTCAGCGACGGTCAGGCCGTCAGTGTGGTGT 504 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 59 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTCGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAACACTGGGGATCTAGCGATGGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTCACTCAAAATAGTTTTCTTCTACCCAACAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCG # Right flank : CGCGCTTTATTGTCAACTTGCAGATCAACCAAACTGTCAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAACGATCAATCAAAATTGATCCACCCTTTTACTCAGGTATTGCTCCTGAGCGTCGTTTATCTTTCAATCGATAACTATCACCACTTAACTGCAAAACATGCGAGTGGTGAAGCAGTCGATCTAACATCGCTGCCGTTAATGTCGCATCATCGGCAAATGCGCTAGGCCATTGGCCAAACGATAAATTGCTGGTCAAAATAATACTGCCATACTCATAGCGCTTAGCGATCACATTAAAAAATAGGTTGGCTTCTTCTCGCCCAAACGGCAGGTAACCGATTTCATCAATGATCAATAACCTTGGAGCCATCACAGAGCGAGAGAGGTATTGCTTCAGCTTGTTTTGTCGCTTAGCGGTCGATAATTGCAGCATCAAATCAGCGGCGGTGATAAAGCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 4801-2611 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWF01000008.1 Vibrio sp. V28_P6S34P95 scaffold131_size4813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4800 28 100.0 32 ............................ CTTTGTCCCATTCTTTGACCGTTCTCACACTT 4740 28 100.0 32 ............................ TTTTTTTAATTACATGCTGGTTATATATTTAT 4680 28 100.0 32 ............................ GGTTCCGGCTGTGTCGTTGGTTTTGAGTTTTT 4620 28 100.0 33 ............................ CCGTATTACTACACGGGGATGCATTGCTATGCA 4559 28 100.0 32 ............................ TTTGTGGGCGGTGCCGATTGATGAAAGCGCCG 4499 28 100.0 32 ............................ TCACGGGCCAAGGCATTGGCCACGGTGTCCTT 4439 28 100.0 32 ............................ GTATAGTAATACGGGGTGAAAGTCCCCACCCC 4379 28 100.0 32 ............................ GACTAGATAAATTAACGGCATCGTGAGAATCC 4319 28 100.0 32 ............................ AGTAATGCTAGTTGCTCATTTTTACGAATTAC 4259 28 100.0 32 ............................ TAAGTCATGAGCAATTTGTTTGTATTGAACAT 4199 28 100.0 32 ............................ CATCATCATCAGTACGTGTAGTATGACCAGTG 4139 28 100.0 32 ............................ TCGCTAAAAGCAGAGCATCAACAATAGTATTT 4079 28 100.0 32 ............................ AGGCACTGGAAAATCATTGAATGCAATAAAAT 4019 28 100.0 32 ............................ GAGACGTCGAAGAACTACCACCGCCCTCAAAC 3959 28 100.0 32 ............................ GTGATGCTTAGGAAAGAGAATCGCTTAACAAG 3899 28 100.0 32 ............................ GCCGGCACCATTGACGGCTGGGAAAAATTGTC 3839 28 100.0 32 ............................ CGATGGCGGCGATGTTCAGCTCTTTATCGAGC 3779 28 100.0 33 ............................ TTTGGACGTTCTTCTAAATTCTGATTCTTATTT 3718 28 100.0 32 ............................ TAGCAATGGATAAAGCGAAAAGCTACGAAGCG 3658 28 100.0 32 ............................ TCCAAATCAACATGACAATTGTCATAGTAAGC 3598 28 100.0 32 ............................ TTGTTCGGCATCACGCATTAGCGTAGCTAAAC 3538 28 100.0 32 ............................ GCTGTGCTTGTAAATGCCGTAGGGCCGCGAAC 3478 28 100.0 32 ............................ ATAATGGTTAGCCGTTCATTACACGGATAATT 3418 28 100.0 32 ............................ GTGCCGACTCAGGTGGAGCTGTTGGAGTCGGA 3358 28 100.0 32 ............................ GCATCATGCAGCAATGCCGCCCAGCGGTGTTT 3298 28 100.0 32 ............................ GTTAATAGTGTTACAACAAGTCACCCTTGAAC 3238 28 100.0 32 ............................ GTCGTGGTTTGACAATAAAGAGGTTTTACAAA 3178 28 100.0 32 ............................ ACTTATGCCCGTTAGCTCTAGAGATCCAGAAC 3118 28 100.0 32 ............................ AATGTTGCTGATTAGACCGAAGTGATCAACCA 3058 28 100.0 32 ............................ TTTGAAAAGTCGTACAAGACAAAAATCCCTAC 2998 28 100.0 32 ............................ AACGGGGCAAGCAATATCGCCTCAACAAATAC 2938 28 100.0 32 ............................ GCATCTGCTTTGCTTGCAAAAGAAGTCATTCA 2878 28 100.0 32 ............................ GAGAAATGATGATGTACGGCTATCAAGCGTTA 2818 28 100.0 32 ............................ ACGCTTTTCGCCTGAACTCTATCCAGGTGGGC 2758 28 100.0 32 ............................ GGGCTGGATTCAAAGCTGCGGCTCAAGCGTTT 2698 28 100.0 32 ............................ GTTGAACATTCCAACGGCTGGCATCTCAACCG 2638 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATTTATTCTAT # Right flank : GCGAGTGATCGGCTCTTCTTATGTTACCGTTCGTTCATTGTGTTAACGATCACCGAAAACTGATCCACTTTTAGCTTATAAATAGCTTAAAAAGTTCGCGCTTTATCGCGTCGTTCTAAGATAAACTGCAACATTCATTCATCAATCAAGGAGAAAATTTGATGAAAGCGATTATCTTGATATGTATCACCATAAGTTCTTTTTTAACCTTACCCGCTTATGCCGTTGAATTTTGGCATTCCAATACGGTTTGGGCCGGTCAAGGACAATGTTCGGCTGTCTTTTCATTTGATAGTGAAATGAATGAAATAATCGATCTTCAGCTTTCAGTTTCTGCTTTTAATCAGGTCGGTGAAGAAGTTGCATCGGGGGTTATTGAAATTGCACACTTTGGCCAATCATCAGCTGATCGTTATATCGACGCATACTTAGAGAGCGAGGCTTTTTGTGATGAACAACTAACCATCTTAGTTAAGGATGCTCAAGCCATCGTAGATGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39932-40489 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWF01000080.1 Vibrio sp. V28_P6S34P95 scaffold32_size56621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 39932 32 100.0 33 ................................ TGTAAGTGGACTGGCGATTTAGGAGATAAAATG 39997 32 100.0 34 ................................ TGGTGCAAGCGATGGGCAAAAAGCCGTTGATAAG 40063 32 96.9 34 ............T................... CTTCAACCCAATGCCTCCTCTATCATTTTGATTG 40129 32 100.0 35 ................................ CTCTGCAGAAACATCCCAAGCCACAGACATTTTTG 40196 32 100.0 34 ................................ CCCAAACTGATGCAAGACCTTGACGGCGGAGTGA 40262 32 100.0 34 ................................ AATTGTCTGTTGTATTAGCCTGCCGTTTTCGTAG 40328 32 100.0 33 ................................ AATTGTGGGCTGTGAACTATCCCACTTGAATCC 40393 32 100.0 33 ................................ GCATACTCACTGATTTGCCATTTTCCGTTTCTG 40458 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.3 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : GGCCGTTTACCGCGCCGAATGGTGGTAAAGTCGATTTGCATTTGCTGTCCTGGCAGGGTTTCAAAACGGACAACCGGCTCAGGAGTGGAACAAAGTTTAAACTGACACACAAAGCGACGGAGCTGAGCAATACCGCCTTGATAGCCGAGTTGAACCACCTCATCAAATAAGACGGTAGCAGGTATCCAATCAGGTTGGGCCTGCTCAATTCGTTGAACCAGATAAGGCTTAAAGGGCTCTAGTTTTGTCACGGGTTTTGCTCGTTGCGCGTAAGAGGGCATCTGATGCTGCTGCAAATGACGTTTTACGGTGTTACGAGAGATGCCTAATTGACGGGCAATGTTACGAATGCTTTGGCCTTGTGCAAAGCGAACATGAATATCCACAAATGTCTCCTTGGTTAACATAAATCACCCGTATAAAAAATAAACGGATGATACCAAGTGGATCAGTTTTCGATGATCGTTAGTGGATCAGTTTTGCATGATCGGTGACAAACT # Right flank : TCCGCTCCGCGGGGGTAACTGGAATAATGGCTCGGGTCGCGCCTCCTACAGGTGTAAGATTTGATCGATGACGTGGCGGTTTTCCTCATGGCAATTTTGTGATGAGCGATTTTTTTGTCAATATAGTCACTTAAATCATGTTTTTATCGACTATATTAGAATTGGTTGTTATCCTGTAACGCTTCACATGGCGGTTAATATCATTAGGTGTGGGGCGATGGGATCACTGTTGGAAGTGAAGCAACTGGGTACGTATAGCCAACAAGGTTGGCAAGCATTAGTTACTGCGTCGTTTGAGGTTGATAAAAATGAATGTATCGCAGTTATTGGGCCGAACGGCAGTGGTAAATCGAGCTTACTTAAGTCGATTACTGGTGAATATTTGGCTGTTCAGGGTGAGTTACGTATTGATGGCCATAAACTGAGCGACTTATCTCTCCAACAAAAATCCAAATTAATTGCTGTAGTCGCACAAAATGATTACGTCGATCCTCGTTTAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 1714-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXWF01000084.1 Vibrio sp. V28_P6S34P95 scaffold134_size4490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1713 28 100.0 32 ............................ ATTAATAATTTGAGTGGAACCGTAAACGTTAT 1653 28 100.0 32 ............................ ACTCGAAAAAGGTGATTCTTATTATCCCGCGG 1593 28 100.0 32 ............................ AGAATGCAAACGGCTTATGAGAATGAGCGCAG 1533 28 100.0 32 ............................ TTGGACACCAACAAAAAAAATGCTGCCAAAGA 1473 28 100.0 32 ............................ TGTTGATTTCGGAACACGTCCTAAATCATTGT 1413 28 100.0 32 ............................ TTACTTAACTCGATGTGAAACGCTTCCTTTCT 1353 28 100.0 32 ............................ TGAGTCTGAATGGCTCAGAACAGGTCGCTACA 1293 28 100.0 32 ............................ TTTAGACGTTCTTTTAAATTCTGATGCTTATT 1233 28 100.0 32 ............................ ATAATGGTTAGCCGTTCATTACACGGATAATT 1173 28 100.0 32 ............................ TTAAAAAAAGACGGCGGCACAAACAACGACCG 1113 28 100.0 34 ............................ CTACACCATCAATTGATTCTAATATTTTTGATGT 1051 28 100.0 32 ............................ TCCAGTTTGAGAACGGACTCCTCTGCTTTATC 991 28 100.0 32 ............................ TCCAGGTTCACCGATACCTGGACCATTTGATA 931 28 100.0 32 ............................ TTTTGGCGTAAGTTTTCCGTAAAGTGTTTTCA 871 28 100.0 32 ............................ GCCGAGAACAACAGCAAGAATAGTAAATCCAG 811 28 100.0 32 ............................ TCGCCAACGGCTTCCGCTAGCATAAGTATTTG 751 28 100.0 32 ............................ ATGGCAAAGAACATCTAACATATCAATTCCGA 691 28 100.0 32 ............................ GTTCAGCTCATGCTCTCGCCCCTCTTGCCGCT 631 28 100.0 32 ............................ ATATTGACGCTTAGCCCAAAACACAGTCGATA 571 28 100.0 32 ............................ CCGAAAATCCGCAACGAAATATTGTTGTAGAT 511 28 100.0 32 ............................ TGAAGAACCGGATTTACCTTTTCCTGAAGAAC 451 28 100.0 32 ............................ AGTCAGATGACCGTTGCTGACTGAAATCAATT 391 28 100.0 32 ............................ TCTTGGTGATTTAGATATTAAAAATGAAAAAA 331 28 100.0 32 ............................ TATTATTTCACCTTTGTTTGATTTTTATCGTT 271 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGGAGTTTTGGGCTTGCGCGAGGTTAGCCAGTTTGGTGCAAAGTCGCTTTGGCAGTCTTGCTTTCGCTTTAAGTTTCGCGAATATGTGTTATCAGAATTTATTGGTTTTCAAAGCAAACGAATGGTCACAAAGTTTGAGTCAATTCGGGTTTTAAAACTCAAACGGTTTGTTGGTTTCTCAAATCGAGTTAATCTCAGCTTTGGTAAAACTTAAGGTGCTGAAATTTAAGCTAACAAGCTGCTTAAGTGGGATTCGCAACGCGTGGCATTTTTAGCATGCGGTGAGTTTTGTGATTAAGTTGGTGTGCGGTAGCTTTCGTAGTGCGTTGCTCACCCCTTAGCAGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATATTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAGTAAGTTACTGCTAGAGTTTCATA # Right flank : AGTGTCACCGATCATGCAAAACTGATCCACTAACGATCATCGAAAACTGATCCACTTGGTATCATCCGTTTATTTTTTATACGGGTGATTTATGTTAACCAAGGAGACATTTGTGGATATTCATGTTCGCTTTGCACAAGGCCAAAGCATTCGTAACATTGCCCGTCAATTAGGCATTTCTCGTAATACCGTAAAACATCATTTGCAGCAGCATCAGATGCCCTCTTACGCGCAACGAGCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //