Array 1 476694-485029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060493.1 Bifidobacterium longum strain BIM B-813D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 476694 29 100.0 32 ............................. GCGACAGCATCGACGTTCTGACGCAAAACCCA 476755 29 100.0 32 ............................. TCCGTGCGATTTACGGAATTTCCAACCGCCGA 476816 29 100.0 32 ............................. GTGATTTTGCTCGATACGCGACTCATGCCAAT 476877 29 100.0 32 ............................. GTGGCCGGCCATGGCACGCAGATGGACAAGTT 476938 29 100.0 32 ............................. ACTTGGCGCGGGGTCTTTTGGGCGTCGGCTGT 476999 29 100.0 32 ............................. GGAGTGTTTTCCCAAACAGCTTATCTACGACA 477060 29 100.0 32 ............................. CTCATGGCGTCAACGGAACGCAAGGGTGCTGA 477121 29 100.0 32 ............................. ACGAAACGAAAAGTCAGAAACGGGATAGAACG 477182 29 100.0 32 ............................. AACACCGCTGACAACGCGCTTGAGATGGCGCA 477243 29 100.0 32 ............................. GGCTGGACACCGGTAGCGAAATGGTGACGGTA 477304 29 96.6 32 ............................T AAGGCGGGTGCAAGCGAGATTGCTCCTCTTGA 477365 29 100.0 32 ............................. TTGGGCTAGAGTGGCCTCCGGTTCCACTCCGA 477426 29 100.0 32 ............................. GCATTTGCGCCGTGTACATGGTGCCGAAAATC 477487 29 100.0 32 ............................. TCGATTCGATGGCCCGACCGTAAGGCAAGTCG 477548 29 100.0 32 ............................. TACATCATCGCCGCTCTGCACAAGGCCACCGA 477609 29 100.0 32 ............................. TGTGGTGCCTGAACCACAGCGGCGAAACATTG 477670 29 100.0 32 ............................. GTGCCGTTAACTTGGCGTTTCTGCCGGTGGTG 477731 29 100.0 32 ............................. TCGCGTCGGCTTCGGTTGGCGTCCGGGTGATC 477792 29 100.0 32 ............................. TGTCGTCTCCATCTTGACGGTGGCATAACGCC 477853 29 100.0 32 ............................. GCCGGTGACGCTATCAATTCACCGTGCCTGTA 477914 29 100.0 32 ............................. TTGTCGTTATCCTCGGTGTCTGTCGAGGGTTC 477975 29 100.0 32 ............................. ATCACGTTCATCGACCCGGACGGCGATTACAG 478036 29 100.0 32 ............................. GCCTGCATGCGCCGCGATGTAATCGGGGTCCA 478097 29 100.0 32 ............................. GTCTGCGGCGCTCATGCGGGTGAAACCGACCG 478158 29 100.0 32 ............................. GCGTCGGCCTCGCCTTCGCGCCCCGGCTGCAG 478219 29 100.0 32 ............................. ACAGCGAAAGCGTCCGACGGCGCGCTTGAGTT 478280 29 100.0 32 ............................. GTCAGATAATCGCCTCGTTGCACGGTGTACCA 478341 29 100.0 32 ............................. GTAAAACGTGTCCCAAAACCGGCATACCACGT 478402 29 100.0 32 ............................. GACGCAAACGGCATCGTCCGCGTCGGCCACAC 478463 29 100.0 32 ............................. TCGTGTGCGTATGCGTCGGCTGTTTTGAGGCC 478524 29 100.0 32 ............................. TTGTTGGTGTGGTCGTAGCTGTTTACCATGAT 478585 29 100.0 32 ............................. TGCCGGGAACCAATCACGCCGGATGTCCCGAC 478646 29 100.0 32 ............................. ATGCAGTTTGGCGTCCGTGTCGTATCCGAACG 478707 29 100.0 32 ............................. TCCTGAATGCGATGAGGGCGGTGGACGCTGTA 478768 29 100.0 32 ............................. GAACGGACGTGGCCACCCCGTCAAACAGGCGT 478829 29 100.0 32 ............................. GCCGGCGCCGACATGAAGGAGCTGAAGGAGGT 478890 29 100.0 32 ............................. GACGTGGCCTCCATGGGACAGAAGCTCGCCGA 478951 29 100.0 32 ............................. ACCATTGCGGAGATCCCGAACTCGCCCGTAGT 479012 29 100.0 32 ............................. GACTCGAAATGAACACCAAGGATTACGGCCAT 479073 29 100.0 32 ............................. GATACCCCAATGAGTGCGCCGATACCAAACCT 479134 29 100.0 32 ............................. GATGTGAGTCTCGCATCAGTCAGACAACAGTA 479195 29 100.0 32 ............................. ACGTTGCTCAAGGCGTTGCGTGCGACCGCCGG 479256 29 100.0 32 ............................. ATTCCACCGAGCATGGCGGAGGTGCGCTGATG 479317 29 100.0 32 ............................. GAAGCCGCTGATGATGCTGGAGCCTGCGTCGT 479378 29 96.6 32 ............................T GCGATATTCGACAGCATCCGAGCGGAACGTGG 479439 29 100.0 32 ............................. ACATCCAGTCCGATAATCTTACCATTCGAGAA 479500 29 100.0 32 ............................. TGGCCGCAGAGCTCGCCAAACGACTCAACGAC 479561 29 100.0 32 ............................. GAGAGTTAGGCAATGAATAGCATAGCATGGAT 479622 29 100.0 32 ............................. GGCTTCCGCAGCGCGGTCGACAAGGAGATGCG 479683 29 100.0 32 ............................. TTTCGTGATATGCACATCGGGGACGACCTGAT 479744 29 100.0 32 ............................. GGCAAGAGCCATGTGACCGGGCGCAGCCAGAG 479805 29 100.0 32 ............................. TGGCCGCAGAACTCGCCAAACGACTCAACGAC 479866 29 96.6 33 ............................A GACGCGGCATGCTTTTCGCGTCTTCCCGTGGGA 479928 29 100.0 32 ............................. CTCGCCATGTACGGCGGCGGTACGACCACGCC 479989 29 100.0 32 ............................. TTGATGACCTTAACCGTGTTCAGGTTGTCTTG 480050 29 100.0 32 ............................. CACACACACGAACAAGACAAGAACAGGACCGA 480111 29 100.0 32 ............................. CCGAAGAGCGATTACACGTATATCTCGCCTAC 480172 29 96.6 32 ............................A CTTGGGGCATGGAAAAACGACCACACCTACGA 480233 29 100.0 32 ............................. GAGCTTTCGACCGTGCCTATCACATAGAGCGC 480294 29 100.0 32 ............................. GTTCGCCACGCTTCCACCCAGTCGGAGGCGGA 480355 29 100.0 32 ............................. GATGCCTGAGCATCGAGAACACCGCGTCATCG 480416 29 100.0 32 ............................. GGGGCGACATTGACGTGTTGACCCAAAACCCA 480477 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 480538 29 100.0 32 ............................. GCGTCCTGTACCACGCGGTCACAATCGGGGTT 480599 29 100.0 32 ............................. GTATGTCACAACGGCGGCAGCAACACCGCAAC 480660 29 100.0 32 ............................. TGATGAGGAATGCGGCACGTTCAACGCGCCTG 480721 29 100.0 32 ............................. AAGCGCCCGGCATGGCATATCATGGGGTACTT 480782 29 100.0 32 ............................. TTATGGCGCCCAGTGCTGGGACTTGTGGGCGA 480843 29 100.0 32 ............................. GACGCTGTCCGCTAGATCGGGGCTTCCGGTCT 480904 29 100.0 32 ............................. GAACCGACGAAGAATTCACCGAACGCTATCGT 480965 29 100.0 32 ............................. GGTGATTATGCGTTCCGCAGTTTCGACAAGAC 481026 29 100.0 32 ............................. TGGCGAAGATGTGGGGCAACGCCTTCTGCTCC 481087 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 481148 29 100.0 32 ............................. GTGCATCTTGATAGCATCCCGTCCGACGAAAC 481209 29 100.0 32 ............................. AACAATGGTTCGACAAACTGGATGGAGTGGAA 481270 29 96.6 32 ............................T GACCGGAATGTCAATCAGGAACTTGTCAGTAG 481331 29 100.0 32 ............................. TGCCCACGGATGTTGAACGTGCCCCATACACC 481392 29 100.0 32 ............................. CGGACAACTGACCGATGCTCCGAAGCCGCCCC 481453 29 100.0 32 ............................. TGCTGACGCTGATTAACTCCACTTACGGTACC 481514 29 100.0 32 ............................. ACTGTCGGTATCACCGCCCGTGACGGTAACGC 481575 29 100.0 32 ............................. GACGTGATGAAGGCGCTCGTGGCCCTCAAGGA 481636 29 100.0 32 ............................. GAGAATCTCTACTGGGGTAGCACAGTTCAGGA 481697 29 100.0 35 ............................. AAAAAAGAACCGCCGAAACCCTCAACAAGCTGCAG 481761 29 100.0 32 ............................. CCAGTGGGCGGGCATTCGATGGACGTTCCCCT 481822 29 100.0 32 ............................. CGGGCGGCAAGCACGCACGAATAGGCGTTCAG 481883 29 100.0 32 ............................. CACAGGCTTGCCACGATGTCGCTTATGAAGTC 481944 29 100.0 32 ............................. GCGTAGGCGTCTACCACTTCGCGCACACGGAA 482005 29 100.0 32 ............................. CAACCGAAGGCATCGGATACGTCAACCCCGAT 482066 29 100.0 32 ............................. CACTACACGCCGGGCCGCGCCGGCCACCGCAT 482127 29 100.0 32 ............................. ATCGCGTGCCATCTGCGACAGTTGGCACCGCC 482188 29 100.0 32 ............................. CTCTGCAAAATGTTCGATGGACGTAAGGCGCT 482249 29 100.0 32 ............................. AGGGAAGTTGTAGCGGCTTGTAGTAGGCGAGA 482310 29 100.0 32 ............................. TACGCCAATTGCCTGACCATCGCGCAACGTCT 482371 29 100.0 32 ............................. CGGTTTCAACGTGTTTTCTATAAACGCGCGTT 482432 29 100.0 32 ............................. TACGTGCTGTCGGCGTTGCCCTCGGTCGAGGT 482493 29 100.0 32 ............................. CTCGCCCATAACGACGGCACCGTTCGCACCGG 482554 29 100.0 32 ............................. GTTGCCGATGGCGTCCACAGCCATACCGATAC 482615 29 96.6 32 ............................A CCTATGGTCGATCAGATCACCCAAATGCTTGA 482676 29 100.0 32 ............................. CTGAGCGGTCACGTTGCGAATATCGCTGATAC 482737 29 100.0 32 ............................. TTCCCTGTGTACGCGCCGTTTTTCAGCATCGC 482798 29 100.0 32 ............................. GGCACGACCATAGCGTCTATGGCGATGACCGA 482859 29 100.0 32 ............................. GTGTTCATCCACCTTATCGGCGGTCTGCATGG 482920 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 482981 29 100.0 32 ............................. TTCGCAATGGTCATGACGTCTTCGTAGCGTAA 483042 29 100.0 32 ............................. GCGGCTATGGGTATCGCCGGCATCGGCGGTAA 483103 29 100.0 32 ............................. GTGCGAACCATTGTTTTTGATGAGATTTTTCC 483164 29 100.0 32 ............................. TGGCCACGGATGTTGAACACGCCCCACACACC 483225 29 100.0 32 ............................. ACCATCGCGCCGAGTTGAACGAGAAAATCGTC 483286 29 100.0 32 ............................. TTCTGAAGCTGGGAGCCCACCAGCGTGGCGAA 483347 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 483408 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 483469 29 100.0 32 ............................. AGGTGAGTATGGACGACACCGAAAACAATGAG 483530 29 100.0 32 ............................. CGGGGTTGGCGAGCGTCTTGTTGAGGAACGTG 483591 29 100.0 32 ............................. GAAAACCCTCTCGAAATCTAGTTGTTCCCGTT 483652 29 100.0 32 ............................. CGTCCTCCTTTCCATTTCTCTGGTGGGATTGG 483713 29 100.0 32 ............................. AGCAAGGATTCCGACAGGGACTGACCCGACCC 483774 29 100.0 32 ............................. ATCAGCCGGATCATCGAGAACGCGCCCGAGGA 483835 29 100.0 32 ............................. TGCGGCGTTGGTCAGGCCGAGCAAGAGCACGA 483896 29 100.0 32 ............................. ACGACCGGCTGGTGGCATCACGCGCTGGTGCG 483957 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 484018 29 100.0 32 ............................. TCGTTGTCTGAAAGAATCGAATCCAAACCCAA 484079 29 100.0 32 ............................. GCGGGTGCGGCTGTCATCACGCTCAAGGCGGG 484140 29 100.0 32 ............................. AACGTGCCGAGGTTCGTGAGGAATTGCTGACC 484201 29 100.0 32 ............................. CATCACAGGATTACACGGCGACGGTGGATGCC 484262 29 100.0 32 ............................. ACCATCAACATACATGCGGACGGGACCATGAC 484323 29 100.0 32 ............................. CATGCGAGCTGCGCTTCGCCGGCACGCTGTTG 484384 29 100.0 32 ............................. CCGGCGCGCCCGAAGCCGACGCGACCGGACTG 484445 29 100.0 32 ............................. GCTGGGTCGCGGGCCGCAACATGGACTGGGGC 484506 29 100.0 32 ............................. CGTTGCCGTCCAAGCCCCAGCGACTTCCGCTG 484567 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 484628 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 484689 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 484750 29 100.0 32 ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 484811 29 100.0 32 ............................. GTGCTGGGCCAGTTGAAGGCCGGCGTGAAGGA 484872 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 484940 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 485001 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 137 29 99.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : GATGAGGTCACCGATGTATTTCGTCAAGTCGGTGTTTCGTGTTTAGTCATGTATTTTTTTTCGGGTTTAGGCAGTTGCATGCATTTTCCTTATTTTTCCGGTTGCGCGGAGGTGTTCCTGCCGAACATGAGGGCCTCACTGACGCGGCGGCTCTGGCCGGTGAACTCGAGGAGCCGCCCGTGGTGCACGATGCGGTCGATGATCGCTGCGGCGAGTTTGTCGTCCGCGAAGACCGTGCCCCATTTACTGAACTCGATGTTCGTGGTGAATATGATGCTCCGTCTTTCGTAGCTGCCCGCGATGATCTGGTAGAGCAGGCGCGCCCCGTCGATGTCGAAGGGTACGTAGCCGAACTCGTCCAGTATGATCAGGTCGGCACGGCCGATGTCCCGGAGCATCGTCTCGAGCGTGCCGTCGCGTTTGGCCTTGCCCAGCTGGAGGACGAGCTCGGCGGTCTGATGGAACCGCACGCCCAGCCCCATGTCGATCGCCTTCATGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487524-487797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060493.1 Bifidobacterium longum strain BIM B-813D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487524 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 487585 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 487646 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 487707 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 487767 29 82.8 0 ............C......T....CG..C | AC [487789] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CGCCGCGAACTCACGCCTGAGCCGCGCCACCGCCCGCGTCACCGTGGACAGGGAGACCTCCGCGCCATGCTCGTCCCTCAACCGCTCCCAGATCCTGGTCGCGGTATGCCGCTGCTTGCGCCAGTTCGCGCGATCCTCCGCGAGCCACTGCTCGATCACGGGCAGATACGGGTCGATCACCGACGCGCGCGGCTTTCTCACCGACGGCACGGCCGACAGATCCTCCTTCGCGAGGTACTTACGCACCGTCGGCTCGCTGACATGTGTTTTCCGCGCGATCGACGCGACGGATTCCCCGTTCCGCCGCAAACGACGGATAGACTGTACTTGGGGCATGCTGATCATAATCCTTTCCGGTCCTTTCTGGCGGAGATACAAGCACCATCCAGTTAAGACCATTCCGTGGTCGGCATGCTCTGCCTAAACCCGAAAAATCATCGTGACTAAACCCGCAACAACTAATTGAACACAAACACACCGACCCTGGCAAGCCGCTGGTA # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 489315-489950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060493.1 Bifidobacterium longum strain BIM B-813D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 489315 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 489376 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 489437 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 489498 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 489559 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 489620 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 489681 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 489801 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 489861 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 489922 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 10 29 94.2 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : TTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAACCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGGACGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //