Array 1 106903-108452 **** Predicted by CRISPRDetect 2.4 *** >NZ_POKY01000166.1 Streptococcus suis strain 1313 SS_1313_Contig166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 106903 32 100.0 34 ................................ AGCAAATATCGAAGTTGGCTGGAAGTCCAGACGG 106969 32 100.0 34 ................................ TCAAATGAATAATAAAAGTCAGGAAGTCAAACTA 107035 32 100.0 35 ................................ TCGGAGTTAGGCACCTTGTTCTCGGAGTTAGGCAC 107102 32 100.0 33 ................................ AATATCTGCTAGCTTCTCACAAAATAACTCAAT 107167 32 100.0 32 ................................ AAAAACTTATTTTGTTCCGCTACATTTTCAAA 107231 32 100.0 33 ................................ TTAAAAAATTCTTTTAGTTCAGGGTCGTTTAAT 107296 32 100.0 35 ................................ CTTGTAGCACTTGGATTATTTATCCTTGCCTTACT 107363 32 100.0 34 ................................ ACGGAAAAGGCAGACCGCTATTATCAAACGGTTA 107429 32 100.0 33 ................................ AAGATTGATTGTCATCTAATACCTCCAAAATTG 107494 32 100.0 35 ................................ AGAGAATGTCTTGGCTCCGCTGACCTTGTAAGAAC 107561 32 100.0 34 ................................ TTGCGCTGGTGTATCTTCTGGCATAACGGCTGGC 107627 32 100.0 34 ................................ ACGAATGGAATTCAAAAGGTCAATGTTTGTTACG 107693 32 100.0 34 ................................ ATGAACCAAGAAAGTAAAGCAAGCACTTTCCAGC 107759 32 100.0 34 ................................ ACGTGGGAAAATCTCCCGAACGAAATTGACGAAC 107825 32 100.0 34 ................................ TATAAAAATAATCAGCATGATACAAAAAAATAAG 107891 32 100.0 34 ................................ TTAGTGTGGATGAAAACACCGTTCGGTGTAATAT 107957 32 100.0 34 ................................ AACCGAAGAGAAAAGAGTTCGGTTAGTTGCTAGA 108023 32 100.0 33 ................................ TGTTAGGGTAATCACTATCATAGATGAACGTGT 108088 32 100.0 34 ................................ ATCAGCGCACAAACTAAGACTGATTTTACAGTCA 108154 32 100.0 35 ................................ AGCACAGGAATAGGCTTCTGTGTCGGATGGATAAT 108221 32 100.0 36 ................................ GACGAAAACAGGTACGCAGTCAACTATCTTCACAGC 108289 32 100.0 34 ................................ AATAATGCCACCTAAGATTTTTAAGACAGCACCT 108355 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 108421 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.0 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGTATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : CTGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTTGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTCGCGGTCAACAGTAAGGACTGCATCTGGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //