Array 1 1153435-1154014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024145.1 Methylobacterium indicum strain VL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1153435 29 100.0 32 ............................. GATTGTGCTCTGATACCTGCGCTCCAGATCGC 1153496 29 100.0 32 ............................. TCGCTCGACGTCACGCTCTAGTCTCGAGGCTT 1153557 29 100.0 32 ............................. CTCATCGCCGCAAATCAGCCCAGTCGCGGTTT 1153618 28 96.6 32 ....-........................ GACGTTCTCTATGCGGACCGCGTTACGGGCGC 1153678 29 100.0 32 ............................. GCGGGGTTGCTCTGGCTCGTCCAGGCAAAGAT 1153739 29 100.0 32 ............................. TTCTTAGGCTTCCACCCGTAGACCGCCTTGAG 1153800 29 96.6 32 .........T................... GTGCAGCTCGCCGATGCGGCCTGGCAGGTCGG 1153861 29 100.0 32 ............................. AAGCGAGCGATGACCGTCGTGCGCAACGGCCT 1153922 29 93.1 32 ......G......C............... GCGACCTTCACCAGGATCAACACGCGGCTCGG 1153983 29 79.3 0 A.T........C.C...........T..G | T,AT [1153995,1154007] ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GGCTCCCCCGCACTCGCGGGGATCGACCC # Left flank : CCGCATCGAGGCCCTGCCACCATACCGGCCGGCGGCGGGGAAAGCCCTTCACGTCCTCGCGCCGCAGCGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCGGCGTAGAGGTCGTCGCGGTGTCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCTCTCGGCGAAACTGCGGTAGATGCGGGAATCCTCCTCCTCGTTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTGAGATCGGTCAGGGCCTTCACGGGCATGCTCCAGTCTGGAATAGCTCCAATCTATAGATTGTAGATATTCCAAACAAGGGCTTGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCGCGGACGATGGCCCTCGACGACCGGGCCGGTCTCGGGCATCCTGACACGCCGCCGGTCGCCGATCTTCCCCAACGGCATCTTTGACATCGTGAACGGTATCAGCGATTTAGCTGGTAGA # Right flank : GCCCTGGCAGGCGTGCGCTGCCGCACGCCGCCGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCCCTTGCGTCCCGCGGGTGCGAGGCCGCGCGGGGGGCTTGTCCCGCGCTCCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAGAGCCTCGGCTACCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGCGCCTACGACTGGCTCACGCCGCTGCGGCCGTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGGTCGGTCGACGGCGGGGTGAACACCGCCGTCCTGGAGCGGATGGGCGTGCGGGTCATCCGCGGCTCGGGCGCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACTCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1755703-1756613 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024145.1 Methylobacterium indicum strain VL1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 1755703 29 100.0 32 ............................. CGCGACAGGTCGAGGCTCGCCTTGATCGGCGT 1755764 29 100.0 32 ............................. CGTGCAGTCCATCTGCCGCCGCTCGCAATGCC 1755825 29 100.0 32 ............................. TCGACCTTCTGCTCTGCGGCGACCCGGTCGTA 1755886 29 96.6 32 ............................A CCCGCGCGACGCCGTCGGAGGCGAGGGTCCGG 1755947 29 100.0 32 ............................. TATTCCTCGGCTCGGGCGGCACTCAACGAAGT 1756008 29 100.0 32 ............................. AGGCCGAGGATGTAGGGGGAGAGCGGCACCGT 1756069 29 100.0 32 ............................. TACTGCCAGATGAGCGTCGGCAGCGGCGGCCT 1756130 29 100.0 32 ............................. CGCGAGGCCGGCGCCTCCCCGGGCTGGGCCGC 1756191 29 100.0 32 ............................. ATGCCGGCCAACCCGGTCATGCGGTTCTGCAC 1756252 29 96.6 32 .......T..................... TGGTTGGCGAGAATGATCGGCCCTTCCACAAC 1756313 29 96.6 32 ............................G TAGACCTCCTCGGTGTCGAAGGTCTGCATCAT 1756374 29 100.0 32 ............................. GATCTTGAAGGCGATGTTGGCGCTGGTAGAAG 1756435 29 100.0 32 ............................. AACCTCCCGAGCCGCGAAGACGTGCTCCGGCA 1756496 29 100.0 61 ............................. CGTGAGATCAACGTCGTCGGGATCGACCTGAGGGCTTCTCCGAGGGCGTGGACGTCATCAA 1756586 28 86.2 0 .A....T.T...-................ | ========== ====== ====== ====== ============================= ============================================================= ================== 15 29 98.4 34 GGCTCCCCCGCATCCGCGGGGATCGACCC # Left flank : GCGATCAAGTCCGTCCTGGTGCCTCGGGAGCGGGACGACGCCCCCCAGGCAGAGGTCGGTTCGACGACCGACGCCGAGCCGACGTGAACGCGACGAGGAGAGGGGCATGCCGCTCTGCGTGGTCGTCACCCGCGATGTCGAGGATCGCTACCGGGGCTTCCTGGGATCCGCCATGCTGGAGCTGGCCCCCGGTGTCTACGCCTACCCGCGCATGAGCGCGGGCGTGCGCGATCGTGTCTGGACCGTGCTGTCGGACTGGTACGGCCAGCTCGGCCGTGGCAGCATCGTGATGACCTGGGCGGACACGTCTGCGGCAGGCGCGCTCGGCGTTCGCACGCTCGGCTCGCCGCCCAAGGAGGTGATCGCCCATGAGGGCGTCCTTCTCACCCGCCGTCCGCTGGGCCGCGGAGCGGGGATACCGCCCCTGGCCCAGGAGACGACCCTGGCCCAGGAGACGAGCTCTTTGATAAGTGAATGATGTCAGTATATTGACTGGTAGA # Right flank : CACATTGACGCCTTCGTGCATCCCTGTGACGGCGCGGGTGGACGCCAACCAGGTCGGCAGCGTGGGGGCGAACCACTCGTTCGAGGTGGGGCACAACCAGAACCAGGCGATCGGGGGCTCGCGCTCGCTCACCGTGGGGGCGGTGGGGGGCGCGGCGAGCGCGGCCCTGGCCGCGGCGGTGTCGGCGATGTCGGGGCAGACGGCGGGGCTGCTGGGCCAGGCGATGGGCGTCGCGATGGACGCGATGGGCGCGGCCTCCGGGAACGGCGGGGCGGCGCCGGTCGATGCGGGGGCGCTCGCGGGGCCGGCCGGGACGGGCGGCGGCGATGCCGCGGGCGATCCCGCGGCCTCTGCCCTCGGGGCGCTGGCGGCGGGGTTCGGCGGGCTGGTGGGCGGCGGCGGCATCGGCGGGCTGATCGGCGCGGGCATCGACGGAACCCGGGCCGGGATCAACGACGCGAGCGTGCGCAGCATGCGGACCGCCGGTGGGGCCGGCATGG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATCCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //