Array 1 473-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAM01000131.1 Ligilactobacillus agilis strain SY212 sequence131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 472 36 100.0 30 .................................... AAGTAAGAAAGGAGCAACGGTCATGATACC 406 36 100.0 30 .................................... CATATTGCACCGGTACGCCGTTTGTTTTGC 340 36 100.0 30 .................................... TACAAAACAATAAATGCTACTACCAAGCCA 274 36 100.0 30 .................................... TTTGGTTCAACATCTTAGACGGTAAGTTCA 208 36 100.0 30 .................................... CCTTCCTTCCGTCCCAATAAATAATCAGTA 142 36 100.0 30 .................................... AAGTAAGAAAGGAGCAACGGTCATGATACC 76 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : ATGTTTAGTACGGGACGATATCGATTTCGATGATCATACA # Right flank : CGTAATTTGGGTGGGTGGATTCATGCCGCAAGTCTCAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1818-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAM01000133.1 Ligilactobacillus agilis strain SY212 sequence133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1817 36 100.0 30 .................................... TCAAAAATACGGGAGGTTAGCAAGCAACTT 1751 36 100.0 30 .................................... TTCTATATACTCTGGAATTTCCTGTTTCTT 1685 36 100.0 30 .................................... AAAAGCTAGCCTACAAGCTGGTTTCACAAG 1619 36 100.0 30 .................................... AGTCTAATTGAACTAAGTCATTGACATTAG 1553 36 100.0 30 .................................... AATTTCATCAATTTTTTAAAATCAACATCT 1487 36 100.0 30 .................................... AAAAAATCACCTTTCGTAAAATCGTGATAC 1421 36 100.0 30 .................................... GCCGAAGGGGGCTTAAAGTCTAGCTTATCA 1355 36 100.0 30 .................................... AAGGTCTTTAAAAAGTTACTAATCAAGGCA 1289 36 100.0 30 .................................... AATAAAAGATTAAAAATCAAAATAGCCCTG 1223 36 100.0 30 .................................... CCAAAGTGGATTACTACGATGAGTTCCTTA 1157 36 100.0 30 .................................... TGAGTTGGTTTCTTTGTTGGTACAAGTGTT 1091 36 100.0 30 .................................... ACGGCTTTCGATTTTATGGCGGTCAAGATA 1025 36 100.0 30 .................................... TGTCTAAATTGTTGTATGGAGATGCTGAAA 959 36 100.0 30 .................................... TTTTCTTAATCAACGAGTTTATGATGGAGC 893 36 100.0 30 .................................... TAAATTTGCATTTTAAAACCTCGCTTTAGT 827 36 100.0 30 .................................... TCATAATAGTAGGTTGGAGTAAGTTTGACA 761 36 100.0 30 .................................... TTTGCATGTAACGGAACGTTAACTGCATCA 695 36 100.0 30 .................................... ATTTTTGCTGACTATTTCAAGACGTGGTGT 629 36 100.0 30 .................................... GCAGTATTCAAGAAACAGTTGCGAGCATTG 563 36 100.0 30 .................................... TTACCGCCTAAACATTTCTTGCGGAACTCT 497 36 100.0 30 .................................... GTGAAATATCAGCAAGCCAATTAGAATCGT 431 36 100.0 30 .................................... ACATACGGGTTGATGAACATATACCGGTCG 365 36 100.0 30 .................................... CCAAGACGTTACGCAACTCAAGTTTGATAT 299 36 100.0 30 .................................... AGGCTAAAGTGCATAACGCCTTTAATGAAA 233 36 100.0 30 .................................... TACGGTTATGAATGTGTCTACGTCTACACT 167 36 100.0 30 .................................... GGGACGATATCGATTTCGATGATCATACAA 101 36 100.0 30 .................................... AAGTAAGAAAGGAGCAACGGTCATGATACC 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : TTAATCATGACTTAGATAAACGTTACAAGCTAGAGTTAGTTAATAAGATTACCGAGGGCTTGGCTCCGCACGTGAGGACAAGTATTGAAAAGAAGGCGCGCGAATTATTTACACTCTTGCAGGAAAGTTTGTTTATGACAGATATTCCTTTAGAAGTTAGTTTTGATGGGGATGTTAAACGGCTACTTAAATACGCTAACATTCACTTACATCCTTCTATATCTAATGATGCTTATGGTATAATTGAAAGTGATTTAAAACTTCATATTGAGTGTGATGATAAATCGTGTATTGTGTTCAATAACCTAGCTAGTTATATGACGCAAGAACAATTTCGTGAACTTCAGTATGTTAATAATGAAATTGGAACGAAAGTCCTTCTAATTGAATTTTCAGATTTGGATAAGAAGGATTATTATAAAAACTGTAATTATTACTATATTGATGCTGACTTCGTTGGTTGGTACTTTTAAAGATTAGATATTGATTAATAAATATCG # Right flank : A # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 29124-29552 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAM01000204.1 Ligilactobacillus agilis strain SY212 sequence204, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29124 30 100.0 37 .............................. GGTGAAGGTGTATAGTTTAGGTGTAGGGTTCGGTGTA 29191 30 100.0 38 .............................. GCTTGGTCTTTCTGCTGTTGATCTAACTCTTTATCGCT 29259 30 100.0 37 .............................. CGACAACGTTTACCGCTTTGTCGATTATGCAAGCACT 29326 30 100.0 36 .............................. AAAATCCGGATTAGCGTCTGCCGGCTTATCACCTAA 29392 30 100.0 36 .............................. GGAGTGGCAGACGTCACTATATAGCTATGGGAGTTA 29458 30 100.0 35 .............................. TCGGCTCTAAGCTTGGCTTGACCGTCACTATAAGT 29523 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AAGGGTGAAAACATTCTCTCACCTTCCTTTGCCCTTTACTCATTTAACTATTAAGGTTATTATAACAAATTTCTCGTAAAAATTTTCTTATGCTTTTTCAGGACAAATGTGTTAAACTACTTATATATTGTGAGGTGCTCATGATGGGAAAACAATTAACAATTTTATTTTGGGGATTCATCTACGGTGAAGTTTTAGGCTACATCGTTTCCGCTTTAAGTGGCTACACCTTTGACGCTAAGCTTTCCGGCTTAATTCCAATGATTGGCGGTTTTATCGTTATTAACTGCTTATCTTACTTCGTCAAAGATTCCCAAGAAAAATAGAACTTATTTAAGGTGCTAACTTCTGAAATCTAAGTTGGCGCCTTTTTTAGTTAAATTTAAAAAACAACAGATAGGCTTCTGAATTAAAGCTTGAAAAAAGGGGGTTCTAAGAAAATCAGTTGTTTTCTTAGAATCCATTGAAAATAATACACCCAGCGTTTTGAATAGAGCCCT # Right flank : CACTACACCTTAAAAGCCTTGTATTATCAATAACTTAATCCATATATTCTGTCTATCACCTTATTTACACCTACAGTCATATATTACCTTCTCCTTCATTTTCTTTCAACCCTTGATATTTCGGGCTTTTAATCATCTGTCGATGTTACCCCTAATTTGCTTTATCTATGGTCGACAGATAAATAATTAGAAAAAGTTTGAAGTTTCATCAGACATATCCATTCCTAAAAACTGTTTATCTAGCCATTTCTTATTACGATTTTTAAAAATAATTACAGAGTCTTTATCATCTCTAATCCATTTCCTTAATTCAATCGTTAATTTCTTTAACCGTGATTTAGTAAGCTCCCCTTCAAACACAGATTTTTGAACATGACTAAGGTATTTTTTACAAATTTTAAAAACATGCCTTAAAACTTTAGCACCATTTTGGTCCAATACAATATCATAAACTAAAATTATATACACTTAAAATCACCACCATAGTTTAAAGGGTTGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2161-1795 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAM01000092.1 Ligilactobacillus agilis strain SY212 sequence092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2160 36 100.0 30 .................................... AAGTAAGAAAGGAGCAACGGTCATGATACC 2094 36 100.0 30 .................................... GTAATTTGGGTGGGTGGATTCATGCCGCAA 2028 36 100.0 30 .................................... TTGGCCTTGTCGACTTGAATCCCAATCTTA 1962 36 100.0 30 .................................... CATTTTCTCCACTATTGTGGACAAATTCAT 1896 36 100.0 30 .................................... TCAGTGCCATTTAAGATAGCTTCGGAGATT 1830 36 94.4 0 ........................A..........G | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : | # Right flank : TATAAAGTATCTGAATAGCTTGCCAACTTAGCCCTGTGGTAAAATGAGGGCAAGACTAAGTGAAGGTTGTGATCTTGTGAAACTTATTTCCTGGAATATTGATTCGTTGAATGCGGCGTTGACCGGTCAATCAGAGCGGGCAGAGCAAAGCCGGGCGGTGCTTGCTACCATTCAAGCCCAAGCACCGGATATTGTGGCTATTCAAGAAACCAAGTTGCCGGCTGGTGGTCCCAACAAGAAGCACGTTGAAGCGTTAGCTAAGTGGTTTGCGGACTATGATTTTGTTTGGCGCAGTTCGGTGGAACCAGCTCGGAAAGGCTATGCGGGGACGCTCTTTTTATACCGTAAGAATTTAACCCCTAAGGTAACCTATCCTGAAATCGGGGCGCCTAGTCCGATGGATCAAGAAGGCCGGATTATTACCTTGGAGTTTCCTAAATTTTATGTTAGCCAGGTTTATACACCAAATGCGGGGGATGGACTTAAGCGCTTGGCCGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 30664-30895 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAM01000126.1 Ligilactobacillus agilis strain SY212 sequence126, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 30664 34 100.0 32 .................................. CCATAAACTTAAAATCATTAGAATTTATAACC 30730 34 100.0 32 .................................. CCATGGGGAGCGGCAACAATCACGTGATAAAT 30796 34 100.0 32 .................................. TCATTTAGTCCGACGTCAGCTTAAACTTGATC 30862 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 4 34 100.0 32 GTTTTGGATGTATGTTAAATTGAGTAGTTTTAAA # Left flank : GCTGTGAGTGTTTTACGTGGGTATATTTTATTTGTTGCGATAGATTATTATTGTCGGGAAATAATGTCTGTATTTGATTGGGTACCTATTATTTCTTTGTATAATTTGGTATCTAATGATGGTTTAGCTCAATTACAAGGATATTTTGTTGCAAAGGTTCAGCAGTTAGAAAACAATTAATTTATATTACAAAAAAACGCCCAAGCTAATTATAAGGTTGAGCGTTTTTTTGCAATAGAAGAAAATAAATATAATACGAGGTATATTTTTGAACTGATGTTTGAAATATATACGTGTTTTTCTTGATGTATTAAAAAATACGAGGAATTTATACCTTGGTATGACTCTAGTTTACTTTAGTTATGCTTGTTAATCAAGTGTTGTTGTTTATTTAAATAATGTAGTTATTCGTTAATATGTTGTTAATATTAAAATGTCTATGGTACAATATTTCTGTTAGTGTTCATCCGAAATCATTATATTCTAGTTAGAAAATATTG # Right flank : ACTTATTATTTTCTATACAGTATCTGTATCAATTTGGTCTAGTAAGTACTTTGCTAGGCCTTTTTTGATGTTTTTCTTGATTTTGATTTTAATTTTGGTAGTGTTAAGTATCTTATCTTAATACTGTTATTTGAGGGTGATATTTTGAATTATGGTGTTGGTGAAGCTTTTAGAAATATAGCAATTGGAGTAATTTTTTTGATTATGTTATCGGTTGGGGTAATGGTTTATCAAATTAATACAATATCTTCATATAATTCTGAGGTTGCTAGTTTGATACAAACAAATGGTGGCGTAACTACTGCAGTAACATCAGTTGCAAATGGACATGGATCGTTAGGCGCGGCATATCATCATATATTTTCAGTTCATCCCAAGACTCCTGCTGATGGACAGAAGCATGATTTTGGTCAACGTATAAATTATTATATTGAGGTACGTGTTCCTGTATTATTAGGAAATAAATTAATATTGAAGACTGTTAGTGATACTACGGTGTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGATGTATGTTAAATTGAGTAGTTTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //