Array 1 75317-75580 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKK01000050.1 Actinomyces oris strain R21091 R21091_contig052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75317 29 100.0 32 ............................. AGGTCTGAGCAGCGCAAGGAAGGGCCCGGTCA 75378 29 100.0 32 ............................. CGCACCGGTCAGGATGGTAAGAGCCAGAATTC 75439 29 100.0 32 ............................. GGCGTCTTCGGTCCCGCGACGATTGGGCGTCT 75500 29 96.6 32 ............................G TCGCCCATGAGCGCCTGGCCCTTGGTGATCTT 75561 20 69.0 0 ....................--------- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTCAGCCCCGCGTATGCGGGGGTAGAGGC # Left flank : CGGGCTGGATGCTGCCACTCATCGGCGGGCTGGGTCGCCGTCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCCGGGGGTCCTCGGCTTCCCTCCGTGGGACTCGCGGTGAAAACGGGGGTGGTTGAGGCCAGTCTCGCCGAGACCAGGACGATGGCTTCTCTGCCTCGAGTTTTGCGAGCCGCTACCGCTTCTTCGTCGCAGTGGACCACCGTTGTGCCGACGGCGGAGGAGCCTGAACGAATTGTGTCCTTGTTGGAGGAATGCGCCTCGGGGCTCGGCTGCCGACGCGTTGGGGCTGAGCGTCATTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCACCTTCGACTCGGAGGTGCCGGGGCCGGTTGTCTTCGACGGCGTCCTCATGGTTCCCCTGGGAGCCAGCACCTTGGCAGTGAATCCACGGCGACCCCGAGCCGACTAACATCGCAGGTCAGCCAGA # Right flank : | # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGTATGCGGGGGTAGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2330-1397 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKK01000064.1 Actinomyces oris strain R21091 R21091_contig068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2329 36 100.0 28 .................................... TGACTAACGTCGCCTGGATGCTCTCACT 2265 36 100.0 28 .................................... CACCTCGACAACACCCCGCTGGCCTCGG 2201 36 100.0 28 .................................... CGCCGATCCGGTAGAGCAAATCTCCGAG 2137 36 100.0 28 .................................... CGCCCAGGTCGTAGAGGATGTCTCCGAG 2073 36 100.0 28 .................................... TGGTGGTCCTGGTCGGTGGGCTGTGGTG 2009 36 100.0 28 .................................... CTGGTGGTCTTACCTGCAAGATCTGGAA 1945 36 100.0 28 .................................... CCCGAGACCTGGGCTGCCTGGGAACGAC 1881 36 100.0 28 .................................... GGTCGTGGTGAGCGCATGTTGGCGTCGG 1817 36 100.0 28 .................................... GCCACGACGATCCCCAGCTCGGCGAAGG 1753 36 100.0 28 .................................... AGTCGCTGAAGAAGGGGATGCGCGTCAT 1689 36 100.0 29 .................................... GCCATGGGCATCACCGAGCTCAACCCGCT 1624 36 100.0 28 .................................... ACTGGAACTCGCTGTACCCGCAGTACCG 1560 36 100.0 28 .................................... TGGTTGGGGGTGAGGGACTGGGAGGTCA 1496 36 100.0 28 .................................... CGCAACACCTCCGGGGCGACCTCAGGGC 1432 36 94.4 0 ..........................A.A....... | ========== ====== ====== ====== ==================================== ============================= ================== 15 36 99.6 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CGTTCCGTGACGACGGTGCCACGCTACCGACCGTCTTGGAGGAGTTGGCTCAGCACTTGGGCCAGTACTGTGAAGGGGACCGAGCCCGATTGGATGTCCCATCGTGGACCGGTCCGAGGCGTGAGTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCATCTTCTTCTGGATGAGGGTTTCTGGATGGCGCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTGGCTGGAGAGCGCCGCAGGGCGAGCGCGATCAGGAGCAACCTGCCGCGCGGTGGCGAGGTGAGGATGCTGTACGTCACCGACCGCGAGTGGTCGCACGCGCTCTGTTTCCGCAACGAAGAGCCCGTCGAGGCCGAGCCGGAGCCCCAACAGCTCATGATCTTCTGACCCCTGACGAGGCGTTTGCGCTGGTCAGAGCCCCTTGATAGACGTTTCG # Right flank : AGTGAGGTGACATGTGCGCAGGGCGGTGGGGGCTCCGGCGTCGTCGGGCAGGGCCGGTGCCGGGCCGACGACGCCGCGGCGCTCCTCGGTCTCGGCGATCATGCGCTCCTGGATGGCGCCGGAGGGGACGGTGGGACGGGTCAGGTCGTTCAGGTCGCGCATGCCTCCATCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGAGGACGTACTTTCGCCACCAGGACTGCGTTCTCCCCCATACGACTGCGGGAAGATCCCAGTTGTCTGGAGGACAACGCAGTCCTCGATCGGAAAGTACGTCCTCGGTGGCGACGCAGGCGACGACAACACGACGGGCGGCGCGCCAGCGGAGAAGAACTCCGCCTGCGCACCGCCCCGGGAAGGCGGGTGGGGGCGAGGGCGCACGGTCCGTGTCGCCTCAGTCTCGCCCCCAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //