Array 1 214647-217920 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCU01000003.1 Moraxella catarrhalis strain 41/539/1 41-539-1_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 214647 28 100.0 32 ............................ AGTGTCATGATTATAAATCACTATCGCAGGTT 214707 28 100.0 32 ............................ AATTATTCATATAATTTTAGAAAAAGGATTGG 214767 28 100.0 32 ............................ GATACTGAAAAGTCTGTTAATCAAAATGAACC 214827 28 100.0 32 ............................ GACCCAACTTTACAAGCACTGTCTGCACAAGA 214887 28 100.0 32 ............................ TTTATCATCAAACCAAAAAGACAGCCAGCCTT 214947 28 100.0 33 ............................ ACTGAGCGTAACCGCATTACCGCCGCCATCTTT 215008 28 100.0 32 ............................ GACACGGACGAACACGAAAAAAACTAATCGCC 215068 28 100.0 32 ............................ CAAAACTTCAATTTTGCCTATCATCAAGAACC 215128 28 100.0 32 ............................ AAGGTGAGATAATGATAAGAGTTGATAAGTGC 215188 28 100.0 32 ............................ TTTGACAATCATCGTATGTGGCTCAGGGGCAA 215248 28 100.0 33 ............................ CACCAAAACCTTGACACGGTCAGGATTTAGCAC 215309 28 100.0 33 ............................ ATTTTGATTTTTGAAGCATTGAGCGAATCTGAG 215370 28 100.0 32 ............................ AAACAAGTCGGTGAGATTATTAAGCCATTATT 215430 28 100.0 32 ............................ ATAGTTTCCGCCACAAAGCAACCGCCATACCT 215490 28 100.0 32 ............................ AATTGGCGTACGCAGTGATTGGTCAAGATGGC 215550 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 215610 28 100.0 32 ............................ GCACACACCTGACAGCCAACACTCAATCAATC 215670 28 100.0 32 ............................ TAAAAGCTCATAGTTAAGCTGAGTTGCGTGAA 215730 28 100.0 33 ............................ ATGGCAGTATTATGAAACGGGCAAACTTATCAT 215791 28 100.0 32 ............................ GCACGAAATACACGCATTACCATGTTCGCTTG 215851 28 96.4 32 ...........T................ AACTAGGAGAAATCTCATGGCAAAAGTTGTAG 215911 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 215971 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 216031 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 216091 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 216151 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 216211 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 216271 28 100.0 31 ............................ GTCAAAGACTCGTAAAAAACAGGCGTTGAGA 216330 28 100.0 32 ............................ ATCAAGACAAGAAAGCTTGATGAAACTGAAAC 216390 28 100.0 32 ............................ ACGGCAGTATCGTAACACGGCAAGCACTCAGA 216450 28 100.0 32 ............................ AAAATGCTTATTAAAAAGCGCACACAAATCCT 216510 28 100.0 32 ............................ TTTTCCGTCGCTCTTAGAATTTGGATTTCAGT 216570 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 216630 28 100.0 32 ............................ TACCCTACCAATAAGCATGAGATCACTGGCTT 216690 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 216750 28 100.0 32 ............................ ATAGACGCTTTTTCAACTCGCAAACAAGAAAT 216810 28 100.0 32 ............................ TTGCTTTGTTGTTAACGCTCGGTTTGTCGTTG 216870 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 216931 28 100.0 33 ............................ ATTTTTCTCAGAAGGCGGCCGCCTAGTTTTAAA 216992 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 217052 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 217113 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 217173 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 217234 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 217294 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 217354 28 100.0 32 ............................ CCTAATTCAATCGATTCAAAACCAAAAATATT 217414 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 217474 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 217534 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 217594 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 217654 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 217713 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 217773 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 217833 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 217893 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //