Array 1 1547734-1551536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077715.1 Saccharolobus shibatae strain BEU9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1547734 24 100.0 36 ........................ AATAGGGTCGTACATTTCAAAGTGATCAATATGACC 1547794 24 100.0 37 ........................ TAATTCGACATTTAGAGGATATAATGAAAATTGAAAA 1547855 24 100.0 33 ........................ GGTAAGTGGCGGAAAAACCGGAAACAGAATACA 1547912 24 100.0 35 ........................ GTTTTTCAGCTACCAGTCCTAGTTCACCCATAATA 1547971 24 100.0 34 ........................ ATCTCTACAGAGGAACTACGTGAATATTACGACA 1548029 24 100.0 34 ........................ TTTAACGGTATGGATCAGAAACAAATCGATAAAT 1548087 24 100.0 41 ........................ ATGCTACCTCTTGCTCACTTAACTTCACAACTACTATTTTT 1548152 24 100.0 37 ........................ TTTACATAAGAAAGACGATGAAGCTGCTAATTATCAA 1548213 24 100.0 39 ........................ TGAAAAATACACCATTCTTCTATCCCGAAACCCTTGTCT 1548276 24 100.0 36 ........................ TTTAATTTGCGAAAAAGTCATAGATTTTTTAAACGT 1548336 24 100.0 36 ........................ TCATATCTGCTAAGCCTCATTTTGGTACTTATTGTA 1548396 24 100.0 36 ........................ TTGTACCTCCAAATCTATTGTAATTCTTGATCTTTA 1548456 24 100.0 35 ........................ TATTATGCCTCGAAGCGGGAAATTAACGATATCGG 1548515 24 100.0 36 ........................ GACAGTTTCGTTATTTGTCTCATAATATCTTACAAA 1548575 24 100.0 37 ........................ CGGTGACGGGCTTTTAGGGGATTACAGTGACGCTGTT 1548636 24 100.0 36 ........................ ATGAACTGCTTAGAAATTCTAAAAGAAAAAGGGTAT 1548696 24 100.0 36 ........................ GAGGTGGGGTGAGATGGGGTGAGATGTCAACCCTAT 1548756 24 100.0 37 ........................ CTCTTGTGAACCTCTTATTGATATAAACGTTCCTAAA 1548817 24 100.0 39 ........................ TTCTGCCTCACCCTTTCATTTGCGCATCTCACCCTAATG 1548880 24 100.0 36 ........................ GATTAAAGACCTGAAGAAATTTGTAACTACTTTCTT 1548940 24 100.0 35 ........................ TATATTCTCCCTTCTTCCAGCCTAAATGACAGTGT 1548999 24 100.0 36 ........................ ATGGAACTAAAGGCTTTGATGTTTGCATTGAAAAGT 1549059 24 100.0 36 ........................ TCTTTACTGCTACTTCTTTCACTTCACCCTTTAGCT 1549119 24 100.0 42 ........................ TTTACAAATTGCATCAATTCTACCTGAAATTTTTATATTTTC 1549185 24 100.0 37 ........................ CAAATCCCCTCAAAAAGGAAGGGGAAAAAGTCAAAAC 1549246 24 100.0 34 ........................ CTATTTCACTCAAATAATATTCGGCAAAAGCTGG 1549304 24 100.0 36 ........................ CCCTATACTCATCATACATTACAGATCCTCCAAAAT 1549364 24 100.0 38 ........................ TAGTCGCTTTACTGTCTAGGGGTGCTACTATAGAAAAT 1549426 24 100.0 36 ........................ TTCCTCAGCCATCCTCCCCTTCGGCTCAGGGGTTAC 1549486 24 100.0 34 ........................ CGGTGCGGTATTTCTATCAAATGGTTTAATTTTT 1549544 24 100.0 34 ........................ ACAACACTTGTCAGTTTGCACATGGAAATTAATA 1549602 24 100.0 35 ........................ CATTCATAAGATTTTTAAGACTTTTGTTGAAAGAA 1549661 24 100.0 36 ........................ AAAAATTAGTACAAATAAGGGGATTATATATCGTTG 1549721 24 100.0 37 ........................ TTTCACAAAATGGACATTTATAATATTGCATTTATTT 1549782 24 100.0 34 ........................ ATCTTGAAATCTTACAATCCTAACAACTTTAACT 1549840 24 100.0 35 ........................ AACGAATTAATTGACTTTTTGGAAAAAACTCATTT 1549899 24 100.0 37 ........................ AGTAGATTAATCCAACAAATGTCGTTTGATAATATTT 1549960 24 100.0 36 ........................ TCAGTTCAGGTGATAAATCCATGAAAAAGAAAAAGA 1550020 24 100.0 36 ........................ TGCCGAGACAGGCTGATTACTATTCTCAATTTCAAA 1550080 24 100.0 34 ........................ TTCTCAGACCACTTGTAAGACTTATACCATATTT 1550138 24 100.0 34 ........................ TCAAATACGTTGCTCAACAACATATTGCAATGTT 1550196 24 100.0 37 ........................ TAATCAATATGACGGAAAAAACGGAATCACAATCAGG 1550257 24 100.0 36 ........................ GCGAATAGATAACTAAGTAAATTTTTATTAATTAGA 1550317 24 100.0 35 ........................ ATGATAAGTATTAGTGCCCAGGTCTTTTTGTCCAT 1550376 24 100.0 37 ........................ GAATTTGTAAGTGAAAGGATGAAAGTCTCGATATTAT 1550437 24 100.0 38 ........................ TGTATTTCACTTAATGTTGGCAGATATTTTCTCCAAGT 1550499 24 100.0 35 ........................ TATTGGAAAACGAGATAATCAGCGACTGTGAAAAC 1550558 24 100.0 36 ........................ CCGTTTGCAGCAGCAGTAACAAATGAGGCGTTAAGC 1550618 24 100.0 35 ........................ CTATTATCGGTCATGAGGCAAACTGTTATGGTGTC 1550677 24 100.0 36 ........................ ACCACCACTTAGGAGTTGTTTTACCGTTGATTCTGT 1550737 24 100.0 36 ........................ CCGCCGTCAATTATGTTATCGATAATAGATATCACA 1550797 24 100.0 35 ........................ TTGTTGTTACTAGCTTGGAGACAGCTACTTAAGGC 1550856 24 100.0 36 ........................ TTAGTAGCAAACATCCATGATAGTAAACAGCAAAGT 1550916 24 100.0 39 ........................ CTCCCTCAGTTTTTCTAGGCTCCACTTCGCTATATGCAT 1550979 24 100.0 35 ........................ GGTGAAAAAATGAGTAAGGAATTAACTATATTCAT 1551038 24 100.0 34 ........................ TAAAAACCTATTTGCTCAATATTACCCAATTTTT 1551096 24 100.0 34 ........................ TTATATAATCCAAGTAATTATCTTATTAAGATAG 1551154 24 100.0 38 ........................ AACCCAAGGGCTACTTGCTTTAAAGTAAAATGTTAGTG 1551216 24 100.0 36 ........................ CAGGTTACTTCTCAGAAGCAAATAGAAGTACCAGAG 1551276 24 100.0 36 ........................ AAAAACCAAGAGCAAGCTCAGTCCCAGGCACAGGCT 1551336 24 100.0 36 ........................ TTTCATGTAATACCACCCAAACGCTTTTCTTAGCGT 1551396 24 100.0 35 ........................ TGGCCAGATGTAGTTACTAGTTTGGCTCCAACAAC 1551455 24 100.0 34 ........................ TTAATAAAATATCCAGACACCTCAGCCGAAGGCC 1551513 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 64 24 100.0 36 GTAATAACGAAAAGAAACTAAAAC # Left flank : ACCTCGCTACCTACAATAACAAGCATATCCAAATCCAATGTACTAAACTCCCTGACACCTTTTGAACTCTCAACAATCAAATCTGAACCCTTCCTCGTTACCCTTGCTTTCTTTACAATCAATATCATGAATATAGTAATTGACTTAAGTAATTTAAAGATTTTTGAAATTTTTATGTAATATTTCTCTCCTTTTTGACGAAATATTCTATTAAAACAAATGGGAAAAAGTTCAGAATAATTACGTTAATCATTCTTTAAGATAAATTTATTTTATGAAAAGCGTATTTTTCCTATCCCTTTTTACGCTTATAAATGCAAAAATTTCCCTTATTTTTAGGTAAATTTGCACTTCAAAACCCTTATGTGAAAGTTTTTAGACCAACCCTAAACTTACGTAAAATCTCCTTCCACACACAAGATGGGTATTTAGGATCTGGAAGGGAAAGCAATATTTATAAATGGGCAAATTCAAATATTTTTTGATGATATCAAGGGCCT # Right flank : CGACCAAGGAGGAGGCCCCACATGCTTCGCCTCTAACATTCCTGTGGGAACCGAGAATCTGTGGGTGTCAACCATGTATCCTCTATATAAATCTTGTGATTGTAATACCTCGTTTTTCTTGCATAACACCAACTACCTTCAGCCCCTAGAAAAATTTACTTGCACACTCCTACTCGGGGTTTTGTCCCCTCTTGTTAGATCGTTCTAGGGGCTTCACAGCCAGCCTCCTTGAATGAGGTTTAATCCCCTTAGACCTTGTGGGCTTATGTTGTTTTTCTCCTTCCTTGCTTATTTCTTTTTCTCTTGTAATACTTGTTTTTACTCGTTCTCTAGTTTTGCGTGAATTCCCCGTAGGAGAGATCTTAGTTGTGCCAGAAGGTAGTAATAACGAAAAGAAACTAAAACCCGAATTTCACAAGAGAAGAAAGTACAATTCTTGGAGGTAATAACGAAAAGAAACTAAAACTGCAAAATACAGATAGCGGTAGGAGTACCTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGAAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 1551917-1554282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077715.1 Saccharolobus shibatae strain BEU9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 1551917 24 100.0 37 ........................ CCGAATTTCACAAGAGAAGAAAGTACAATTCTTGGAG 1551978 24 100.0 36 ........................ TGCAAAATACAGATAGCGGTAGGAGTACCTGGAACT 1552038 24 100.0 37 ........................ ACCAACATTAGCGTTAGCATTCAAAACGGCAACCCAG 1552099 24 100.0 37 ........................ CTGATACGTTATGTTGATTGTCTTTGCGGGTAGCAAA 1552160 24 100.0 36 ........................ ATTAGACATGCTATAGAAAAATGTTTAGAAGAAAAA 1552220 24 100.0 38 ........................ TGAATATATTAATACACCACTTTGGCTATTAGCCTCCA 1552282 24 100.0 36 ........................ TAAAATATAGTATGTGTCAGGGCTATATCCCTCAAG 1552342 24 100.0 36 ........................ TTTTTACAAAGTTGAACTGGTACGTTAGCTTTACTT 1552402 24 100.0 36 ........................ AAAGCGAGGGTTGATGTGGTACGCCTCTGCCCCAAC 1552462 24 100.0 36 ........................ CCCAGTAAATGTCATTCATGTCGGATTTCAACCCAT 1552522 24 100.0 36 ........................ TTTGATTGTATTGGCTTGCTTGTTGCTCTACGGCTT 1552582 24 100.0 37 ........................ AATTTCTCTCTCATTTCGTTTTCATGTTCCTTCAAAT 1552643 24 95.8 33 ......................T. ACAATCGGTGCTGGTGGTGCCGGAGGTGCGGGT 1552700 24 100.0 37 ........................ CTGGCGGTGGAGGAGGTGGTTTTGGCAATGGAGCCGG 1552761 24 100.0 35 ........................ CTCAGGAATAAGGATGTAATCCGCAGCAAGTAATG 1552820 24 100.0 39 ........................ GACAGTGTAGTTACCGCTGTGCTAAAGCGAATTCCTCTA 1552883 24 100.0 35 ........................ ATTTGTTTATCACCCGATACAACTTCTGGTTGTAT 1552942 24 100.0 34 ........................ ATTAATACATTCTGTTGTGCGCTTTCTCCCTGCC 1553000 24 100.0 36 ........................ ATTAACGAGATAATAAAATCAAACCTACCCGTCATA 1553060 24 100.0 35 ........................ TTGGGTATGAAAGAGTTTTCTCCTACCATTCCAGT 1553119 24 100.0 36 ........................ AATCAATATCCTCAGCAGCCCAATACAAATCCGCAA 1553179 24 100.0 35 ........................ CTACAACTAATTTTATACTACATAGTACTATTTTT 1553238 24 100.0 36 ........................ ACCAATTATGCAAAAGCATATGGGATCTCAAATGAT 1553298 24 100.0 36 ........................ TACGGAAATGTTCCTATTTTACCGTCATTTTTTAGG 1553358 24 100.0 34 ........................ GAAGTTGGGGTAAAACTGCGTTAGTTGTAAAGAT 1553416 24 100.0 38 ........................ AGCCCTATACCCCATATCTTTTCGCTAAACCCACGTTC 1553478 24 100.0 35 ........................ TCCATTAGGGCCATATCCGCTCAGGTTTTGTACTA 1553537 24 100.0 35 ........................ ACTCTGCAAATCAGTCTCTAAGACGTAAATCACTG 1553596 24 100.0 34 ........................ ATTTTTTTGTCTTCTAGGAGGCGTGGTAGACCAC 1553654 24 100.0 36 ........................ ATTTTTTTAACCTCAGAAAAGAACGGTTTAAGGTTT 1553714 24 100.0 37 ........................ GCTAGTGCAATATTAGAAATTGCAAGATATCCGTATC 1553775 24 100.0 35 ........................ CCTATAGTATTTTATTTGCGTCCTTACTACCTCTA 1553834 24 100.0 34 ........................ TTAGGTGCTCTCGGCGGACTTGCACCGGGAATAG 1553892 24 100.0 36 ........................ GTTGCTACTTGCATACTTGTTCGTAGCAGTTTGCCC 1553952 24 100.0 40 ........................ TAAATGTTAATCTAAAAGATAGAAAGTTAATATTTTATAT 1554016 24 100.0 37 ........................ TATTCGATAGCAAAAGAAAAAGTAAAGACTCAAGAGC 1554077 24 100.0 35 ........................ ATAGCTACGACTATGACTTTTTTTGTTGATGTTGA 1554136 24 100.0 37 ........................ AATATATCAACAAAAGGCTTTTGAGGATAATCAGAAC 1554197 24 100.0 38 ........................ GGAATTTATCGTATACTGAACATTACCATATTGGAATG 1554259 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ======================================== ================== 40 24 99.8 36 GTAATAACGAAAAGAAACTAAAAC # Left flank : AACTGGCCAGATGTAGTTACTAGTTTGGCTCCAACAACGTAATAACGAAAAGAAACTAAAACTTAATAAAATATCCAGACACCTCAGCCGAAGGCCGTAATAACGAAAAGAAACTAAAACGACCAAGGAGGAGGCCCCACATGCTTCGCCTCTAACATTCCTGTGGGAACCGAGAATCTGTGGGTGTCAACCATGTATCCTCTATATAAATCTTGTGATTGTAATACCTCGTTTTTCTTGCATAACACCAACTACCTTCAGCCCCTAGAAAAATTTACTTGCACACTCCTACTCGGGGTTTTGTCCCCTCTTGTTAGATCGTTCTAGGGGCTTCACAGCCAGCCTCCTTGAATGAGGTTTAATCCCCTTAGACCTTGTGGGCTTATGTTGTTTTTCTCCTTCCTTGCTTATTTCTTTTTCTCTTGTAATACTTGTTTTTACTCGTTCTCTAGTTTTGCGTGAATTCCCCGTAGGAGAGATCTTAGTTGTGCCAGAAGGTA # Right flank : TAAAAAGCTAGCCTAAATCCTCCAACAACCCTAGACATGGAGAGGGATGATAAGGGATATGAGGACGAAAGGTTGAATGTAAATTCATGAAACCTCAATGAAAGTCTGACCCCCACATAGTAACCACTAGAGTCATTGATGTACTTAAAAAGGGGGTGATATTCGCGTTGTAGTTCTCTACTCAGGTGGAGATGACTTAGCAATATACGGAAAGTGGGACGATCTTCTTATACTTCTCAGTGAACTCTCTAATTTAATAGTTGAAATCTTATCATCGATTTCTGTCTCTGGAGGAATATTTATATTTAAGAAAAAGTATCCCATAGCCTTCGCGTACTCATTTGCTAAAGAACAGGAGGGAATCGCTAAGAAAGAACGACACGGAAAAGAAGGCAGGATATCAAGTAATATATTCGAGAAGTATACTGAAGATGAGAAAAAACTATGTGATGGCTTAGATAAGAGATCTTTAAGCTGGAGTGAGGCTGTTAAATTTCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGAAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1565897-1561718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077715.1 Saccharolobus shibatae strain BEU9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1565896 24 100.0 42 ........................ TTATATATTACTATAATAGGATCCGGTGTTTCTTCTACCTTT 1565830 24 100.0 42 ........................ TAATTCGGGCTAAATGATGGACCTCCACTACCTCCTCCTCCA 1565764 24 100.0 41 ........................ GTTATAATATTAGTCACTGCGTCAAGAATCTGCGGATTTGC 1565699 24 100.0 41 ........................ CTTTTGTTTGTGTAAGCTGGTAACGAAGTTCACCATTCTGT 1565634 24 100.0 41 ........................ AAAGTATAGATCCTGGCATTTACGTTGTTTGTCGTAGTTAT 1565569 24 100.0 41 ........................ AGCTTTAATCTGCTCCGTTTCTTGCCCATTTCTTACCATTG 1565504 24 100.0 39 ........................ TCAGCACAAACGGGAGGAATACCCATAACGCTTTACAAC 1565441 24 100.0 40 ........................ ATAGGTTACGACCTCATTCGCTATAACTTTTTGCAAAGGA 1565377 24 100.0 43 ........................ TTTCTCTTCTTCTCGTTGTTGATGATGATGATGATAATGATGA 1565310 24 100.0 39 ........................ TTTTATTAGCCTTATTCTGCTCTGATATAAAAAACTCAA 1565247 24 100.0 38 ........................ CCTCATCTTCGGAAGTCTTCGGTGGGTACATTTGTCTT 1565185 24 100.0 39 ........................ ATTATACCACAGCTGTGTACTCTTTTCTATTCTATTCCA 1565122 24 100.0 41 ........................ TCCATAGTTAGGATGGGCGTGCTTACTAATACTGTCTTTTT 1565057 24 100.0 39 ........................ ACCGTTAAACCACTTACAATCGCTACTAATGTATTTAGC 1564994 24 100.0 40 ........................ TCTGAAAGGTTGAGAAGAAGAAAACAAGAAATGTTTTTTT 1564930 24 100.0 41 ........................ ATCCTTTAGTTTAACTGGAGGTCAGCCTAATAGTTCCTATT 1564865 24 100.0 40 ........................ AAACAAATACAAATTCCACCATCCCACACTAAACAAATCC 1564801 24 100.0 41 ........................ TATTGCAATGGGCAATTCGTTGTCCCACAATATATACCGGT 1564736 24 100.0 40 ........................ ATCCCTCAACTTTGTCCATGCTATTTCTCCATTACGTTTT 1564672 24 100.0 37 ........................ ATCAGTACCCCTAGGCACCAACATGAGTTCACCATTA 1564611 24 100.0 40 ........................ TTCTCAGAGCCAGTAATTAACTATAAGGACTATCTCACAC 1564547 24 100.0 44 ........................ AGTATACTGTTACCAGTTCAATGTTACAGGAAATGGAACTTATA 1564479 24 100.0 40 ........................ CGGCGTGGGAAGAGAATCGTCATCTCACTCCCTCTCTTCA 1564415 24 100.0 39 ........................ TTTCTATAACGTCCTCTTTTTCCACCCCTAACCCTGCGA 1564352 24 100.0 41 ........................ ATGCTGGCTACAGTTGACCAAATCTGTGTTAATTGTAACAA 1564287 24 100.0 37 ........................ CTACGGAGAGAAGTATAAATAGAGCTAAAAAAGTATA 1564226 24 100.0 41 ........................ CACTATCAGCCGTTAAACTTAGAACCCGGTACAATCCTCAC 1564161 24 100.0 40 ........................ TATCAACTCGTCAGTATCATCAAACCCTTCACCTAATAAT 1564097 24 100.0 40 ........................ ACAACAGTACTTCTACCTCTTCTACAGCCTCACCATAATT 1564033 24 100.0 42 ........................ TTTCATTAAACTGATCATCTGTATACATATCCATTATAACAC 1563967 24 100.0 38 ........................ ATAGCAGCTAGGGCATGCAGTCCTCTGCCTTTTTCCCT 1563905 24 100.0 41 ........................ TAATAGAGCATTAAAATGTAAAAATAAAAACCTTTTGGTTA 1563840 24 100.0 44 ........................ GCTTTTTATAAGATGGTAGCCTCACCTTCAAACGAATTAAAGAA 1563772 24 100.0 38 ........................ AAAAGAGCAAGAGGTGGAGGGACACAAGGTGGAGGGAC 1563710 24 100.0 40 ........................ ACACCTAACCCCGCTATTGCACTACCCGCCCCAATTCCCG 1563646 24 100.0 39 ........................ AATGTCTTCTGTTTATAGTGTCAATAAACAGTACACCGG 1563583 24 100.0 40 ........................ ATAGAACAAAGCATCCGCACAACCAACATCTAAGATTGTT 1563519 24 100.0 39 ........................ TCCCCTTTATGAGAACCATGATAATAACCCCTTCTTTTC 1563456 24 100.0 40 ........................ TTTCCAAACATATCCTGCCAGCACAGCCGATTACATAGAG 1563392 24 100.0 40 ........................ AAGAGCGGGGCAAATCCAAACCCCACCGCTAACGGTGGGT 1563328 24 100.0 40 ........................ CCTAAGCAAACTTTTTTCGCCCCCATTGTAGGTAACAATA 1563264 24 100.0 39 ........................ CAAAATAACAACAAAAGACCCACGTTACAACAACTGATT 1563201 24 100.0 39 ........................ CTACTTCAGCTAATTCAAAGCTCAGTTCCGGAATTACAG 1563138 24 100.0 38 ........................ TCAGCTTCTCACCAAACGATCCTAATAGCGCCCTCGAT 1563076 24 100.0 42 ........................ CCTGTGGACTTCTACATAATACCCGTAGAAGCAGATGCCGCA 1563010 24 100.0 40 ........................ TTGCCTGTGTTTTTCTGTATTGCAATACATTCGTTAGCAA 1562946 24 100.0 37 ........................ TATAACTGTCCAACGTTTTCTAATTCACGAATTTTAT 1562885 24 100.0 43 ........................ AGTTACGCTTTCATGGAAGTATATAGATTACTAACAGATACCA 1562818 24 100.0 39 ........................ GATGTTTCTCGCTATCCATCTTATCTTTCTTCTTAATTT 1562755 24 100.0 39 ........................ TACAAAGTACCTTCAAGATGTAAAGAGAATGGTTTTTAT 1562692 24 100.0 41 ........................ GCACCATTTCAACAATTACTTCAACTTGACTTATCCAATAT 1562627 24 100.0 39 ........................ GCATAAACGACCAAACGCATAAGCCTCACAATCACATGA 1562564 24 100.0 40 ........................ TATAACTTTCAATTACACAGACAATAAGGGAAATACCCAA 1562500 24 100.0 38 ........................ CTTATTCCCACATACCCTATTTGACTCCAGGGGAATGG 1562438 24 100.0 39 ........................ ACTGCTGATAATGTATTCTATTTATCGGATGATCAAGCG 1562375 24 100.0 39 ........................ AAGTTCTCAAGACCCTTACCTTTTGCGACATTTGCTAGC 1562312 24 100.0 39 ........................ TAAGGGTACTATAACCGCATCCGAAGCTTCTGATGTCAT 1562249 24 100.0 37 ........................ AATATTTTCGTGAACTACGGATAGCTCAGAGTTTAAG 1562188 24 100.0 43 ........................ CTTCAGCTATTGCTATACTTAACTCTGGTATTACGAATTTCAT 1562121 24 100.0 39 ........................ GCGCTGTCCTCCTCACCGCCCTAAAGGGTGAAGTTTTTA 1562058 24 100.0 41 ........................ ATTAACAATATCTTGTTTAGTGTCTTCTCTAAGTCATTATT 1561993 24 100.0 39 ........................ ATAATAGATGAGAAAAAACCCAATCCTTTATTTTCTTGT 1561930 24 100.0 38 ........................ CTTAAGTGACGCTGAGGACTATTTGCCTGGTACTATTC 1561868 24 100.0 39 ........................ CAATATAAGTCCAGAGGGATGTACAAGTATGGTATAAGG 1561805 24 100.0 40 ........................ GGAGTAGTAGAATATACTTTCCCCGCTGCGGTTCCTATAT 1561741 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 66 24 100.0 40 GATAATCTACTATAGAATTGAAAG # Left flank : GCTTTACGGGGGGCATGTGGTAGTTCCACCCCCGTAGCTCCTCCTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTCCGTAACTGTCTAACTATCTGCGACCTCATAATATAATAGTGTGTGGTAAATCTAAAAACCGTTTTAATGAGGTAGAGGAAAAAGTTCCCAGGTTTACTAGGGAAAGCCCTTAAAACTATGGTAAGATCTCTATATAAAGATTAATCGTGGAAAAAGGGAAAAATGGTAATCTATCGTTGAGGAAAGTATATAGTAGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGAGTTTCCTTGATCGTAGTTCTCTTGGGAGACAGGGCGTCAGCCTAAATTCATTATCTCCATAAAGAAATCATCATCTTCCCAGATTTAGTAGGGATTGCAGACTTTGAATGAAAAATTGTACGCCTAGAGGAAAGTTAAGCTTATAAATAGAGAAGAAAAATAATATTGTAGTAAAGGATTAATAAAGCATCA # Right flank : ATATCCCAATTCATTATCCTTGTAGGTATAGCTGATTTCAATGATGACAATTCTTCCAGAATAGGCCAATTTAATAAATCATTCCAGTAGTCAGAATATTTATATATCATCCAGACTAATTATATATAATGGAGACTAAAGTAAAGGTGGGAAAGAAGTTAACAATTTACATACCTAAGGGGATTGCTGAAGAACTTAACATTAAAGAGGGCGATATATTAACTCTAAAGGCTAAGGATAATGAGATAATTTTAGAGGTTAATAACCCAGTGGCCGATTCAGGTTTCCATAGTGGATTGTAATTATGGCAAAAATAGATTAACAAAGGAAATTGTTAAGCGTGAATCCTTACCAGTCCATGGGAGAGTGTTCAATTAAATTCATTTTATTTCAATAAATAAATTGAATTCGTAAAGGAGACGTGAATCGCCCTAACCCAGTTTTGCTATCAATAAAAGGTAAGAAGTTCACTAAAATTTCTCCAGATGAGGTAGAAAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1570370-1574405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077715.1 Saccharolobus shibatae strain BEU9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1570370 24 100.0 40 ........................ TCTAAAATCCTGCTTGTAGCTTCAACGTCCCTTGTGATCT 1570434 24 100.0 38 ........................ GCAGTTGAAGAAGCAGCTGGAGGACCTGAAGGCGCAAT 1570496 24 100.0 39 ........................ GGTCCAGGCTGCAAGTAGTGCTGCATCAACCAGTGCAAC 1570559 24 100.0 41 ........................ TTGATTCTGTTGGTAGCATTTCGGTCAGTTCAGGAAATTCC 1570624 24 100.0 40 ........................ AAGCATAGCAGTTACTGTAGACGTACGTGACAGTACAAAT 1570688 24 100.0 42 ........................ GTTACCGTTATTATCGGCTTTCCCGTTGATCCGGGCTGAGTT 1570754 24 100.0 39 ........................ TTTTAGTGTTTCTTCAACTTTTTTCTTCTTTTTTGTTTT 1570817 24 100.0 39 ........................ TTTTAGGAAAAAGAAAGAAGTATTAGTTTATCAATCTTT 1570880 24 100.0 41 ........................ ACCCATATTTACGATCACCCTCACCAAAACTGAAATTCCAC 1570945 24 100.0 38 ........................ GTTACCTTTTCCATAAACTGGTGAATTTAACTGCTGAA 1571007 24 100.0 38 ........................ GCATCATCAAATATATATTCATCAATAACCTTAGTCAC 1571069 24 100.0 38 ........................ ACAGGGTCCGATCCGTGAGGACCCACGAAACGGGGTTG 1571131 24 100.0 39 ........................ TATCCCTTCTCTCGGTTCCCATATGCCGAATAGTCTCTT 1571194 24 100.0 39 ........................ GAAAGGAGTCTTTTTACTATCGCAGGAACATCCTTTTCA 1571257 24 100.0 41 ........................ CTTAGTATTTGTTCTCCTAGTCCCGAAAAGAATGATTTCAA 1571322 24 100.0 41 ........................ CGCAAGAACTATAACTACCCCATTGTTTCCCGTAATACCGT 1571387 24 100.0 40 ........................ ATTATTGCTCCGAAAAAGGCACCCGCAGCTCCGTAGATCA 1571451 24 100.0 41 ........................ GTTGACAAAGCAAAGAAGATTCTTGATGAGGCTATTGCTGG 1571516 24 100.0 39 ........................ GTAGGACACTTTAAGGTAATATGTGATGGCAAATTAGTA 1571579 24 100.0 39 ........................ ATGTAGATATTATGTAGAACAGGAAACTACTAAGAAAGA 1571642 24 100.0 37 ........................ TTATAGTTCCAAATGTTTTCACATCTAGGACAGGTTA 1571703 24 100.0 45 ........................ TAGAAAGGCTATCGTGGAAAAGATTCCTAGAGAAATATAAGCCTG 1571772 24 100.0 41 ........................ TTAATTATCTGTATTACTCTTTGCTATATAAGGATTTCTCC 1571837 24 100.0 37 ........................ CTAACAACTGCAAACGGGCAATTTATTGACAATGGTC 1571898 24 100.0 37 ........................ TCTTCTAGTCTGATTCCAACACTAATTGTATACAATT 1571959 24 100.0 39 ........................ ACAATAATAGGTAACCTCTTTCTCCATTCTATCATACCA 1572022 24 100.0 41 ........................ AAACATATTTCCTAAACGGATACGCATTTCTAGCGTTTCTC 1572087 24 100.0 39 ........................ ATATCAACTGCTTACATCAGCTGGCGTTGCCAGCGGAAT 1572150 24 100.0 42 ........................ ATATCCCCTATATCCAGCTAAGGCTGCTCCGTAATTGACTGT 1572216 24 100.0 39 ........................ AGAAGGTGCTACAGCGTCAATTTTGAAAATAATATTGAG 1572279 24 100.0 41 ........................ ACAAACCCAGCCTCGTAGATGTCTTCTAGCCTGAAGTTCAT 1572344 24 100.0 40 ........................ GCAATAAATAAGTTGTACCCCGTATAGGCTGCTTGCAACA 1572408 24 100.0 40 ........................ AGAACAAACCCAGTCCCAGGCCCAAACTAAATAAATAAAA 1572472 24 100.0 41 ........................ TTATGAAGGTAAACATTAGGATTGAAAACACACTTATTACA 1572537 24 100.0 39 ........................ TACATATCATGTTCATTGAACACAATCTTCAGTCTTTCC 1572600 24 100.0 39 ........................ GAAAAGACAAGAAATAAAACCTGATGATTTATCAGATTT 1572663 24 100.0 41 ........................ AAATGTGGGTTCTTGAACCGGGTTTGCTAGTATTACATCAT 1572728 24 100.0 40 ........................ ATATTACTTCATACCTATGCCATACAGTATCTTTACTCAA 1572792 24 100.0 39 ........................ TAGGTTTCTTCTTTTCCTTCCCGAAGTGGGTTAGACGCA 1572855 24 100.0 38 ........................ AGTTGTTGGAGGAAATACCTGATTGAACATCAAAGGGT 1572917 24 100.0 39 ........................ TCTCCAGCGGAATACAATATATTACTTGCATTATGTGGA 1572980 24 100.0 38 ........................ TGCCTCCCAGTTCTACTGGTATGTAAGTGTGCCTTTAT 1573042 24 100.0 39 ........................ ATTTTTTCCCAATTACCTACAATCACAGTGAAAAGTGTG 1573105 24 100.0 41 ........................ GCAAAATTTAGTGATTTTGTACCAAACGGTGCTTATTATGT 1573170 24 100.0 41 ........................ AAAGAGAAGAGCAAGGACATTTTAGAGGGTGTATTAGGATG 1573235 24 100.0 40 ........................ ACAAGATAATGAGAATATCGAGGATATTAAGTAATGTTAA 1573299 24 100.0 42 ........................ AGAGTTCCAGTCAGCATTAGCACCACTAACTATCCCATCAGT 1573365 24 100.0 41 ........................ AATATCCAGGAGCAACTTCGCCACTTCGGAGTATTCGGAAT 1573430 24 100.0 38 ........................ TAATAATTGAGCCATTTCTCTAAATCAGAGATTGAATC 1573492 24 100.0 38 ........................ GGATCAACCGTTTTATATCCTACTTTACTATAGGCTAT 1573554 24 100.0 39 ........................ AAAGTTATTTGATTCCCGGATATTGATGGTGAAGTGTAT 1573617 24 100.0 38 ........................ ATTTTTGTGATGGCATTATTTCAGTTCACCACGTATAA 1573679 24 100.0 41 ........................ ATTTTATTGTATATTTTTCACTCATCACTTCTTGAAGCTGT 1573744 24 100.0 39 ........................ GTCGTATAGATGATGAGGACTATGGTTCATTTTAAACGT 1573807 24 100.0 41 ........................ ACTCAAGCTTTTGATTTTGAATCACCGATTTATAATATTTT 1573872 24 100.0 39 ........................ TTAGACCTTATGATATCATCTATCTTATCTAAATTTACG 1573935 24 100.0 40 ........................ CCTATTTTGAGGATCCTAAGAAACTATTTAGTGTGGATGA 1573999 24 100.0 39 ........................ GTCAACATTGCCGTATTCTTTTCTTTCAGCTTTGTCAAA 1574062 24 100.0 37 ........................ TTTATATATACGCTCTGTACTGTTACGTTCCCCGCAG 1574123 24 100.0 39 ........................ AATAGTCCATGTTCAAGAAGCGAGACAAGGAATGACATC 1574186 24 100.0 41 ........................ CTTTTGTTTGCACTAGTGATACATGCATCAACCGGGGCCGT 1574251 24 100.0 38 ........................ CTGGAGCCAAGTGAGGGCTATAACTGTGAGCAATGTGA 1574313 24 100.0 45 ........................ TTTGTCCTAATTGTCCTTCATTTAATCCACCACCTAAGCCAAGAT 1574382 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================= ================== 64 24 99.9 40 GTTAATCTACTATAGAATTGAAAG # Left flank : TATTTCGTAGACCCTCGGAAACGGATAGTTTAACCTTGAAGTTTGAGCCCTTAAACTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAATAATTACGAGATTATCTTCTTTTTGTGCCGAAGTTTCATTTAGAAGTCTCAGCAGAAAAGTTTCATTAAAACCCATGGTGACAAAATATGACTTCATACCATAGAATTGGTATTACCACCTCATAAATCTTTCTATAACTTAAGAGCTAGTTGTTGAGGTAGGTATTTTGTAGTTTTGTATTTTTTGTCCGGTTTTTGTAAGTGTTGTTTCTTTTAGGTTTTGAGGAGGGGAGGTAGGATGTTGTCCTTAAATGATTACCTTTATGAAGAATATCTTGTTGTCCCGGGTTTAGTAGGGAGTGTGAAAACTAGTAGAAAAATTGAAGATATGAGAATGAAGTAAAGTTTATAAGTAAAGAAGAGAAAATAAGAGTGTAAATAGAGATTAATAAATCCTCA # Right flank : TCATAGTCTAGCGTGAAGGATACTTTACATCCGTGGTTTGCTTTGCCGTAAAGCTTTTAAATTGCGCAGAAATAAAAATATTATGGAACAAGAAGGCAAGAATTGTGAAAAAATTATATCAATAGCTTCATCTGCAGCTAGGGTAGTAATTCATTATCAACAAGCTTACGATATTTTAGATGAGATGGTTAGATTTGCAGATACTCCTAGCAGAGCCCTAGATTCTGTGTATAAGCTTTCTAGATTAGTTTTTAAGACTTTTAGGGATATTCAAGATGATAAGCGAATTGTAGATAAGAATTTGAAAGGTGAAGCTCTAGAAAGGTTGAAGAATTGGGCGGAAAATCTAGAAAAAGCGTTATATTTGTGTTTTAACACTGAAGATAGAGCTAGATGGATAAAGGAGTTTGCTTCATTATCAATTTCTCCCGATTATCTTGTAATTAAAATAATAGGAGGTGGTACGTAATGAAATACATAAGAATTAGTGGAAGATTTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //