Array 1 5364-6488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTL02000010.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0302 NODE_10_length_239386_cov_36.242223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5364 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5425 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 5486 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 5547 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 5608 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 5669 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 5730 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 5791 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 5852 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 5913 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 5974 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6035 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6096 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6157 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 6218 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 6279 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6340 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 6401 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6461 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22611-23983 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTL02000010.1 Salmonella enterica subsp. enterica serovar Bareilly strain HIY0302 NODE_10_length_239386_cov_36.242223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22611 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 22672 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 22733 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 22794 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 22855 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 22916 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 22977 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 23038 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 23099 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 23160 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 23221 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 23282 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 23343 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 23404 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 23465 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 23526 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 23587 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 23648 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 23710 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 23771 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 23832 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 23893 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 23954 29 96.6 0 ...............A............. | A [23981] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //