Array 1 8436-9195 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRSA01000004.1 Pseudomonas aeruginosa isolate 381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8436 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 8497 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 8558 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 8619 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 8680 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 8741 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 8802 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 8863 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 8924 29 100.0 32 ............................. CTGCGCGTTCACGCCGAAACCCTTGGCTGGGT 8985 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 9046 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 9107 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 9168 28 79.3 0 A..........A..C..-.....A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17788-18792 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRSA01000004.1 Pseudomonas aeruginosa isolate 381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17788 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 17849 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 17910 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 17971 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 18032 29 100.0 32 ............................. GCGCAGCTCGATCCTGAGCAGGTCGATGCGTA 18093 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 18154 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 18215 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 18276 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 18337 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 18398 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 18459 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 18520 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 18581 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 18642 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 18703 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 18764 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTCGACTGTCGGCACCTTGCTGGTGTGGGTCGGTGAGGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35711-36938 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRSA01000029.1 Pseudomonas aeruginosa isolate 381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35711 28 100.0 32 ............................ TGCAGGGTGGCGGAACCGGCTGCTTTGCCGCC 35771 28 100.0 32 ............................ AACTCAAAATTGCCCAATCAAACCGCGGGATA 35831 28 100.0 32 ............................ GCGTGCAGCAGATAGCCCTCAAGGAAGCTCAA 35891 28 100.0 32 ............................ AGCAACACCAGCAGCAACGATTACAAGTGGTT 35951 28 100.0 32 ............................ TATAAGCATGGGTCTGATGTAGTTGTTCGAAC 36011 28 100.0 32 ............................ AGCCATTTCGGCGAAGGGACTGAAGAGGGCCT 36071 28 100.0 32 ............................ TTTGGTGAGGCTTGCGCTCCCTGGGTGTTCGA 36131 28 100.0 32 ............................ CAGGAACGTTTGCTCGCGCTTTGATCTCAAGC 36191 28 100.0 32 ............................ AAGATGGTCGACGTGCTGATCCTGGCAATGCG 36251 28 100.0 32 ............................ GTTCCATATCCAACACCGGGACGGGAGTCCGA 36311 28 100.0 32 ............................ ATCCTGATATCCGGCGCTGCTTTGCCGACTAT 36371 28 100.0 32 ............................ TCCCGAGGAAACGCCATGCACACCCTCAACCT 36431 28 96.4 32 .................T.......... TTGCCGGTGGCCGTTTCGACGATGTGGAAGAA 36491 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 36551 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 36611 28 100.0 32 ............................ TTGCGGATCCGGCGGTAGACGACCATCCGCAC 36671 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 36731 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 36791 28 100.0 32 ............................ TCGACATGGCGACGGCTCTTGAACGGTTCTAT 36851 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 36911 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAATGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGACGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46632-45462 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRSA01000029.1 Pseudomonas aeruginosa isolate 381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46631 28 100.0 32 ............................ TACATGATAGGAAACACTGTCACCCTGGTGGT 46571 28 100.0 32 ............................ ACTTACGCGATGGGGCTGGATGATTGGGGCGC 46511 28 100.0 33 ............................ CCGACGATGCGGTCGTGCTGGGCGACGGTCATC 46450 28 100.0 32 ............................ TTGAAGTAGTCATAACGGTCATAGTGCTTAGA 46390 28 100.0 32 ............................ TTATTGGTCGTGGTCGCAGGGAAGGCACTCCC 46330 28 100.0 32 ............................ AGTTCCTCTATGGTTCCGGTCCGGTCGCGCAC 46270 28 100.0 32 ............................ AGGGCTCCATGGACGGAATGAGTCGGCCCTCC 46210 28 100.0 32 ............................ TCCAGGTGCTGGCAAACGTCAGCCCCTTTGCA 46150 28 100.0 32 ............................ TGGAAACACCGAGCGCTGACGCCGATCTCGGG 46090 28 100.0 32 ............................ TTCGAGTCGTAGCGTCGTCACGGCCGTCGATG 46030 28 100.0 32 ............................ TGGTCGATATTCACGACCGGAGACCGGTGGTG 45970 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 45910 28 100.0 32 ............................ AAGTGCAAGAGAAGTGTGCGATTAGCGCCGGA 45850 28 100.0 32 ............................ CACCGGTCCCACCGTCACCGCCACCCGTTCCG 45790 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 45730 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 45670 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 45609 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 45549 28 100.0 32 ............................ AGTCCGCCCAGGTGCTCGAGTACCGTGTCGAC 45489 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCTACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //