Array 1 21-2026 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000125.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 ............................ CAAGACTTACCACCACCACGGCCACCATGAAA 81 28 100.0 32 ............................ AAGCACGTATTGCGAATAAACAGCGTCACTTG 141 28 100.0 32 ............................ GTTCATCGGCAAATGGAAAATAATTATAAATA 201 28 100.0 32 ............................ TTCGCAAAAAAGAGCGGGAAGCACGAAAACGC 261 28 100.0 32 ............................ ACCTTGTTCGTCTTGATCTAAGCAACCATCAA 321 28 100.0 32 ............................ TCACAAACAACAAAAAGCCCTGAACTATCTTG 381 28 100.0 32 ............................ AGTACAAGCGGTTTTGAGCTTTTGATCTATCT 441 28 100.0 32 ............................ ACATGATCCAAACTTGCCTGTTTACACATCAT 501 28 100.0 32 ............................ CGACTTCAGGTGAAGTTGAGCATACAAATGAC 561 28 100.0 32 ............................ GATATGTGTTTAGCTATATCCGCATTAAAACA 621 28 100.0 32 ............................ ACATTGATGCTTGGTGGCAGGGTGAGCAGAAA 681 28 100.0 32 ............................ ATCGTCATGCACACCTACTGCTTTTTGTAGTT 741 28 100.0 32 ............................ TGGTGATGTGATTGATGCGGCTGTAGCTCAGT 801 28 100.0 32 ............................ TGTGCGTGAGGATGGGCAATTGATTGGAAGTC 861 28 100.0 31 ............................ TCTTGAAAATAAATGTTCTGAATCTTTATCT 920 28 100.0 32 ............................ TATAAAAAGGGTTGCAACTGCTGATCTGATTC 980 28 100.0 32 ............................ GCTTAGCGTAATTCAAACCACCAAGACAAATA 1040 28 100.0 32 ............................ TACAGTGGTTTGTAGCGTGCTCACCTGATTCG 1100 28 100.0 32 ............................ GCAGCGTGTGAAGAAGGGAAGCCGTTGGTGGT 1160 28 100.0 32 ............................ TGTTTGACAATTTAATTCAAGCTGAACAGCTT 1220 28 100.0 32 ............................ ACCATAATTGATATTGTGGTGCTCTTGGAATA 1280 28 100.0 32 ............................ TTATTCCAAACAAGAAACTGATCTGCCGCACC 1340 28 100.0 32 ............................ TCAAATTGATTTTAGTGTTCTTAGTGCCAAAA 1400 28 100.0 32 ............................ ACTGAGCCTGACGTTCAATAAGGAGATAACCA 1460 28 100.0 32 ............................ AGTATCAAGTTGAAATAGGTCATCAGTTGTAT 1520 28 100.0 31 ............................ TTGCAAGTGGTTTATAATTATTTTTCATTTG 1579 28 100.0 32 ............................ AGCAACGTACATCGCATCAAACCTAAGTCTAG 1639 28 100.0 32 ............................ TCGATTTGGCGTGACAACCAAGTCGGGGAAAA 1699 28 100.0 32 ............................ TTTCTTTGCTGCTAGGTTCTGCAAAGCCGTGC 1759 28 100.0 32 ............................ TATGTTCGCAAAGCAGAGCGCAGATTTAAGAA 1819 28 100.0 32 ............................ TTCTGAGATAATTATTTCAATGTCTATTAATT 1879 28 100.0 32 ............................ TTGGGGCCATTTCGCGCGCTCAATGGAACCCC 1939 28 100.0 32 ............................ AGGTTCTGTTGGTACAAAACATTGCATTGAAT 1999 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : ATAGAACAGTTTGTTGTTGGG # Right flank : AGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1238-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000083.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1237 28 100.0 32 ............................ AAACACAGCAAACCCTCAAGCTACGGATATAA 1177 28 100.0 32 ............................ TTTAAGATCACCAGAAGTAATATATTTAGTTT 1117 28 100.0 32 ............................ AGCAGCTCCACGAGCTAAGACTTTAGATACTT 1057 28 100.0 32 ............................ TCTTGAAGTTGTTGCTGCTCAAGTTATTTCAA 997 28 100.0 32 ............................ TGCTCAACAATCTTGTATTGATCTTGCTATTG 937 28 100.0 32 ............................ ATCCGCCAACATTGGCAGCATTGGCTGCACGC 877 28 100.0 32 ............................ TTAGATGTATCGGCAGCTTTAGCTGGTCATGA 817 28 100.0 32 ............................ TGCTAAGACTGAACCAGTCTACATCATGGCTC 757 28 100.0 32 ............................ TAACTGTTAATACTTACCGTGCAGCCAATGCA 697 28 100.0 32 ............................ GTATGCCGTGAACTCAACCGCTTTCCGATTAA 637 28 100.0 32 ............................ AAACGCGCCACTTGTCGAAGCACGCGACTCGA 577 28 100.0 32 ............................ AAGCATCAACTACTTTGACAAATTGCGCTTAA 517 28 100.0 32 ............................ ATAACTGCAACTTACATAAAGTTTCGCACCAT 457 28 100.0 32 ............................ AGCAAAATCTATCTCTGGCTCATATTTATACT 397 28 100.0 32 ............................ CAGATCATACCAATCATAGGCTTAGTTATGCA 337 28 100.0 32 ............................ AAAGCTACCAAGTGACGCTGTTTATTCGCAAT 277 28 100.0 32 ............................ ATTGAGAGAAATTGCGGTGAGCATGGTGTACT 217 28 100.0 32 ............................ TAATAGCTTGTGACGACAAATGCCCGCTATAT 157 28 100.0 31 ............................ CCAAAATAAAGTAAAAATAATTGTAAATAAT 98 28 100.0 32 ............................ AGTACGAAGATTACTGCAATCAAGACTACGAG 38 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TGGAACAACTAAACTTAAACCATTGGCTAGAAAGACTGCAAGATTATGTGCATGTCTTATCTGCTCGTGAAGTTCCAGAAGATAAGATCAATGGCTATGCAACTTACTTTAAAGCCAATCCAAAATTAACGATTGAACAGCGTATTTTGCATCAAGCAAAACGCCGTGGAATTTCAATTGAAGAGGCAAAGGAACACTTTGAAGCATTGGAACTGACGGAGACTTTTGAACCTTATATTAATATGAAAAGCCAAACCAACGATATGAACTTCCGTTTGATTATTGGGAAAAAACGTGTTGATGAAGCATGTATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCAGAGTTTTAACCCAATATTTTTTAGACTCTTTAACAGCTTAATAAAATCAATAAGTTACAACAAGCCATTTTTTGATTGGGTAAATTTATAAAATACATGATAAATGCTTGTTGTAACTTATATTTTTGCTTTATTATAACT # Right flank : AACCATGAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7669-8266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000076.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 7669 37 100.0 33 ..................................... AATAGCAGATCGACGAACGCTGAATAGCCATTC 7739 37 100.0 32 ..................................... GGTTTAAGCTCTTCAACCTGTATATCTGTATG 7808 37 100.0 33 ..................................... AGGTATTGATACTTATCTTCTGCTTTAACATAG 7878 37 100.0 32 ..................................... ACATTAAGCTCAACAGCGATAGCACGTACATC 7947 37 100.0 34 ..................................... GTTGAACCTGCATCTTAGCAGTATCTTCCCATGC 8018 37 100.0 33 ..................................... TGACCTGAAGCATATTGATGCGTAGGGATAAAT 8088 37 100.0 33 ..................................... ATATAATCACCTGTTAACTTCCATACGTCTACA 8158 37 94.6 34 ...................TA................ TCCTCTTTTGGTTTTGCTGATTTACGGATCCAGA 8229 37 89.2 0 ...................TA..........G....G | C [8263] ========== ====== ====== ====== ===================================== ================================== ================== 9 37 98.2 33 GTCTGAACAGACTTCCCTGCTGATAAGGGATTAAGAC # Left flank : GATGACCGTTTATTTTATTACTCGCCATAAAGGTGCATTAGAATGGGCTAAAGAGGAGCATGTACATTACGATGTGCATGTTACCCATTTAGCAAATTTTGATGAACTGCGTGCTGAAGATACGGTAATCGGGACTTTACCTATTCATTTGGTTGCAGACTTGCATGTGCGAGGTATTCGTTATGTTCATTTATCCATGCATGTGCCTGCACATTTCAGAGGTTTAGAATTAAGCGCACAACAGTTACGCGATTGTCGTATCCGATTGGAGGAATTTTATGTTGTACGCCCTAACCCAGTTTGATCAGCACGCCCATGTATGGGACTACAATTCATGTATTGACATAGTATTCGCACAAAAATTATCACAACATATTGTTTTTTATATTTATAAGAAAAATTGTGAAACATTTTGTCATACAGCAACTTTACTGATACATACTTTGAAATATTTAGCCTCTATAAGTCTTTGCTTTACAAAAGAAAAAAAAGAGGGTAGA # Right flank : GGATCAGCAAAGCACTGCTTTGCCCGAGTGCAAGACGAAAGCTTTGCTTGAGTTAGACGTGAACCCTCGATAGTATCTATTGCAAAATACTGGATAAAACGACCACCTATTCCTGTTCGTAACATACCAGTCATTCCTATTTCTTGAACCACTTGGATATGAGACAAAATCTCATATCCTTTTAACTGGTTACATAGCTAATTTTGCGGATACTAAACGATTCATACTTACACCACGTTCTGCTGCTTCTAATGCTAGTTTTTGATGAACCATTGATGGAACACGTACAGCAAAACGACCACTATATTTCTTCTCTGAAAGTGGCACTGGTACTTTTTCATTATTACTGATCATATCGGCTACAACCTCAGCAACAACATTAACAATACCTGAAAATGCTTTAGATTGATCTGCATCAAGCCAAGATAATGATGGAAATTCAGCACATTGTCCAACGTATTCATTATCTTCTGCTGACCACATAACACGGTAAGTATATT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACAGACTTCCCTGCTGATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 25806-23444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000038.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25805 28 100.0 32 ............................ AACATGTACAGGCGATGATTGCGGTCAATACA 25745 28 100.0 31 ............................ CACAAGATTCAGTTTCTTTTCTGTAATGGGT 25686 28 100.0 31 ............................ TAAAGAGCTTTTAAACCACGCGCCCAAACTA 25627 28 100.0 30 ............................ TTCACGACGTGCTAATAAAGCTTTGGAAAA 25569 28 100.0 31 ............................ ATCATGGAAAATCAAAAGAAAACCGTGATCT 25510 28 100.0 32 ............................ CTGAGCTGTAATCATTCTCCAGTGCTGTTAAA 25450 28 100.0 32 ............................ TGACAGATGGAACAAAATTGGTACGATTATTA 25390 28 100.0 32 ............................ ACATAGAAATACGGCTGATTAGTGTCTTTTTT 25330 28 100.0 32 ............................ AGCGTGACTACTGCATTTGACCCCAATATCGA 25270 28 100.0 31 ............................ TACAGCGGAACAACAACAAAAACCTTACCTT 25211 28 100.0 32 ............................ TGAAAGGCGCGGATAATCGTTTACTTGAATAG 25151 28 100.0 32 ............................ ACGAAGAACTTTAGCAACTTGGCTTGCGTTCG 25091 28 100.0 32 ............................ TCAAAATCTGCTAATTCTTTGGGAAATGTAGC 25031 28 100.0 31 ............................ TACAAAGGGAATAAGTCGATATGTTATAGAG 24972 28 100.0 31 ............................ CACCGATCAGCCGTTCCTTCAAAATTTGTTA 24913 28 100.0 32 ............................ AAAAGTACATCAAGCTCGACGTGAATGGAAAG 24853 28 100.0 32 ............................ GAAGTCAATTGCATCATATTTCTGCGGATTGT 24793 28 100.0 32 ............................ GCAAAAACCTATGCGAATGCCAAGGCGAAAGC 24733 28 100.0 32 ............................ AAGGCGAAAGCTGAAGCGGATACAGCACTTGC 24673 28 100.0 32 ............................ AGCATTATGAGATGGCACAGTTAATGGCCATG 24613 28 100.0 32 ............................ TGCATAAATACCCTGCACTTCTGCTGAATTAT 24553 28 100.0 32 ............................ GCACGCGTTTGCTGCTCTGTGATAATCAGTGC 24493 28 100.0 32 ............................ TGAAAATGTTTGGAAATATTTATCTGTAAAGC 24433 28 100.0 33 ............................ TTGCCAAGTGCCTCTGTTGCTGTATCTTGAGCT 24372 28 100.0 33 ............................ CAGTAGGGGCTTATCTCAAAACTGCGTTTATAG 24311 28 100.0 32 ............................ GAAACATGAAAATCTAAATATAGCTGATTTTG 24251 28 100.0 32 ............................ ATCAAGACCTGTGACTGAGGTTTTATTTGAGT 24191 28 100.0 32 ............................ AACCAGTGTTTCTAAAGCCTCGTCAAAATCAG 24131 28 100.0 32 ............................ TGTAGTCGGTGCTTTGCTGACTGCAATGTCTT 24071 28 100.0 32 ............................ TTGGGGCGAATAGATGCACCATCATTACCCCA 24011 28 100.0 32 ............................ ACCTACGGAGTTTTCTTCGGCAACGGCTTAAC 23951 28 89.3 32 .......A..G......T.......... ATAGAGAATGCAATTGGAAATCCTGACAATGC 23891 28 89.3 32 .......A..G......T.......... AGAGAACAAAGCCAATGATTGACATAATCAAT 23831 28 85.7 32 ......AA..G......T.......... GTACGTGAGAAGCACCAGAGCCGCCAATGTTT 23771 28 89.3 32 .......A..G......T.......... AGCAAAATAGTTGTATCCAATCACCTGTTTAC 23711 28 89.3 32 .......A..G......T.......... GGAAGATTGCCACGTTCCGTAGCGATCATTTT 23651 28 89.3 32 .......A..G......T.......... TGCCATTCCATTTTTACGCATTGCATTTTTCA 23591 28 89.3 32 .......A..G......T.......... CGTAAAATTAGATAATTCTTCAATTGTCATCT 23531 28 89.3 32 .......A..G......T.......... TAATTAAGTGTGAGGGCACAGGCACGGCAGGA 23471 28 78.6 0 .......A..G...G..T......AT.. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 97.2 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TTATTTATGATGAAGTA # Right flank : TTGGGTTTCAATTATTGCCAAAATAAAATTAGGTTAAGGATATCCATCTAGGATAATCCATAATTTTATCTAAATATTAAAAAAAGATCCTGTCTACTCCTCATTTGAGGAATAGACACAATAGTGCTTTTCTCTAACACTAATCATATTGTGAAGTAAGGAGAATATCATGAAATATAAAATGGCAGCTGCTGCGGTCTTGGGTACTTTATTATTGGGAGGTTGTGGTGGTTCAGATGATGTCATTGATAATATAAAGCAAGAAATTGATGATAAAAATAAACCAACTGAAACGACTACCGCCAATTGGGGCCTTGAAAAGACGGTCAATACAATTACACACTCTGCTTTAAGTACCTTTGTTAATTTTGGTTTTGTTGATGCATTGGTCTATGGCGCTGATGAGGCTGTAGAGGGTACGCCTTGTTCTCAAGGCAACTATGTAAAAACAAGCGATAAAATTACCTTTAATAATTGTAGGGGTTTATTTGATGATGATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49-736 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000164.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 ............................ GTTAAAGTCATAAATACAAGTTGTTCCTTGAA 109 28 100.0 33 ............................ CCCACGCTGTAACCAGTACAAGACCAATTGCAC 170 28 100.0 32 ............................ AGTGTTAGCATTTGCGGCTGCATCTTCATCGG 230 28 100.0 32 ............................ AGTCAGTTAATGTAATTGGCAATTTTATAACT 290 28 100.0 32 ............................ CCCGAAACAATCAAGACCGCAGACAAAGAAGC 350 28 100.0 32 ............................ TCGTCCCCATCTTCGCCCTCTATTGTTTCGGA 410 28 100.0 32 ............................ ATCTGCACATGCTGCTTCATCAATTGATGCTA 470 28 100.0 32 ............................ GACAAGTTGACCATTAGATAAAGTCATACAAC 530 28 100.0 32 ............................ TCAACTAGAAAAAGTGTTAGATGCAGCTTGGG 590 28 100.0 31 ............................ TTACAGAAAACAAGCATTCCACCAGAGAGTA 649 28 100.0 32 ............................ TTGGTGTGATGTCATCTCAACCTTTATTAAGC 709 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : ATACGCCATTTAGAAATGACAACTCAATTGTGATTTATGACGAAGCACG # Right flank : TGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-1581 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIEB01000134.1 Acinetobacter parvus DSM 16617 = CIP 108168 strain DSM 16617 contig_0134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55 28 100.0 32 ............................ TATAATTGACAATAGAAACAAAGAAAATAAAG 115 28 100.0 32 ............................ AGAAGTGGGTTTTACTTGAACATCCAGAATCT 175 28 100.0 32 ............................ AATAAGAATGACAAGCACGTTGAACAATACAA 235 28 100.0 32 ............................ ATGATATTTGGTTCATAACACAGTCGCCACGC 295 28 100.0 32 ............................ TATTAACATTCGTTTTAATGCAGAACCCAATA 355 28 100.0 31 ............................ AACAGGGGACAAACTGGACGTATCACAAGCC 414 28 100.0 32 ............................ ATGCCCTCGGTGCTTGAAAATGCCTTCAATCC 474 28 100.0 32 ............................ TCACTGTGGTGCTGTAGTAGTTCCTGTCTAAT 534 28 100.0 32 ............................ TGAATCTATACGTTTCTGTATCTCAATATTTT 594 28 100.0 32 ............................ TGACATATTGACGGTGCCCAGTCACAGAAAAT 654 28 100.0 31 ............................ ATAAAATAATAGAATTATCAGGAACATCACG 713 28 100.0 32 ............................ GCCAGCAGCGTTTGAAATTACTTGTTGAGCAA 773 28 100.0 32 ............................ ATTGCGATTGTAAGAGCGAGAGCGTTGCTGTA 833 28 100.0 32 ............................ ATTCTCGCCAGAGCAGCATGACTGCCCTGATA 893 28 100.0 32 ............................ ATTTCCATCCATGAAGTATTCAGCATCAAACT 953 28 100.0 32 ............................ TGCACTATATGCGGCAGGAACACCAAACAAGC 1013 28 100.0 32 ............................ AATTAGTTTATGCAGAGAGGAGCAGCGGAATA 1073 28 100.0 32 ............................ AACAGAAGATAAGACATTTCAACATGCGTTAT 1133 28 100.0 32 ............................ CTTTGTTTTAAGTGTTTTGAATGATCGTATGA 1193 28 100.0 32 ............................ TGATAACGATACAAAGCCGTCACGCACTAGCC 1253 28 100.0 32 ............................ GTAACAGCGTTTAACATCTATATTCTCCTTAG 1313 28 100.0 32 ............................ GACAATTGGTACTCCGCATATTGTTTTAAAAG 1373 28 100.0 33 ............................ GACATTCTTGGAAAATCCGTAGGATGTACTTGT 1434 28 100.0 32 ............................ TCAAAAATTCCCCTGAACCCCTGCTGATAAAT 1494 28 100.0 32 ............................ TGTGCCAATGCCCAACTATTTACAAAACTTAG 1554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : GGCGACATACGCCATTTAGAAAAGGTTCTGTTGGTACAAAACATTGCATTGAATG # Right flank : TGACAACTCAATTGTGATTTATGACGAAGCACGTTCATGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //