Array 1 10047-10213 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLT01000029.1 Porphyromonas gingivalis strain WW2885 NODE_29_length_29856_cov_10.8807_ID_71085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10047 36 100.0 29 .................................... TTCACTCTCGATTGCTTGCTCAAGTGTGA 10112 36 100.0 30 .................................... ATAATTGGCAATAGACATGGGATTTAGGTT 10178 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCATGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAGATGGATAGAGGAAGTGTAACTGCCGATTGTGTTGGTGCAGAGCTGTTCGTCCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGACCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGTGTGATGGGTTTCTTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3673-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLT01000085.1 Porphyromonas gingivalis strain WW2885 NODE_85_length_3859_cov_3.27599_ID_71197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3672 30 96.7 35 A............................. CGAATGGAAGACCGAGGGGAACCTGTTGTCGAACG 3607 30 100.0 35 .............................. CAACCGCGAGGCTGCACCCTTTCTGCTTTTGTTAC 3542 30 100.0 36 .............................. GCTCAATAGATTCTCCTCCCAATCCATATTCGATCA 3476 30 100.0 36 .............................. TGCAACCCGTGCAGGGAGATACTCCCTGCACGAGTT 3410 30 100.0 35 .............................. CAAACGATTGTCCTGAAAAAGATTCTCCGTGAGGA 3345 30 100.0 36 .............................. CGCCGTCGGGTATTCTCCGTTCCGGCAGAACCGGGC 3279 30 100.0 35 .............................. CTCCTCCAGTTTCAGCCGCGAGCTGATACTACACG 3214 30 100.0 36 .............................. GTTTCTCTGATTCTGTATATTGCCTTGTCTGACAGC 3148 30 100.0 34 .............................. GGAGATTACATAATTATAGACGATAGAGATTGCG 3084 30 100.0 35 .............................. CAACGCTACAGTGGCGGCTTCGGGCAACGCTACAG 3019 30 100.0 36 .............................. CATTGAGCGGATCATTGCACGTTTCATTGCAGATTG 2953 30 100.0 36 .............................. CTACATATCCGCGCGCGCTGCGGAAACGACGCTGCG 2887 30 100.0 36 .............................. ATCTGGAGAGGAAAAAAATATGTGGGGTCGTTGGCG 2821 30 100.0 36 .............................. CCGTCAAGCTTGTACAGGACGGATTCAAGTCCGGAG 2755 30 100.0 36 .............................. TTTCAGTTCAACCGTGCAAAACCGCCTCGTGCCGGT 2689 30 100.0 35 .............................. TGTTTCTTCAGTTCATCCTCCGTCAGCTTCGCCTC 2624 30 100.0 36 .............................. CATCCGGGAGCAGGCTTGGCAACACGCACAAGTCTC 2558 30 100.0 36 .............................. TATATTCGACAATTCCGTCCACATGTGTGCGGATAA 2492 30 100.0 38 .............................. CTCGTGTAAGAATCCAGAGCTTCGATGTACTTTTTATG 2424 30 100.0 36 .............................. CGTTGCGAACGACTTCCATCAGTTTTAATTCCTGTA 2358 30 100.0 35 .............................. TATTGAACAAGATCTGTTACAATAAATGAAAGGTG 2293 30 100.0 34 .............................. TTACTGTAAAAGTGTTTGTCGAAAGCTTGGACGG 2229 30 100.0 35 .............................. ACAAAAACGTCCCGATATTTTTTCGAGACGGAACT 2164 30 100.0 36 .............................. TTTGATCTCCGCAAGAAATGTCGCGAATTGAAGTTA 2098 30 100.0 36 .............................. CTGCGTTGCGGGCGTCTGCATGATAACCTTTGCACG 2032 30 100.0 36 .............................. GTTTATATAGTAACAATACATTGTTAGAATCTCTTT 1966 30 100.0 37 .............................. ACCCAAGCGGCTGCCCTCCTCGACAACCTTGTTTATC 1899 30 100.0 36 .............................. CTCCGCTGACAACTTACCGTACATGATGCGGCTACT 1833 30 100.0 37 .............................. AATAGACTGATTGTGTTCAGAGAGAACTCCGCCATGC 1766 30 100.0 36 .............................. TGGCCGAGTTCGATCCCGTATGCACGTTCGACTCAA 1700 30 100.0 35 .............................. TATTTTTCATTGAATTTATCTATCATAGTAATAGA 1635 30 100.0 37 .............................. CAATTAAAAAATGTGAGCGCATAAGTCGCTATAGAAG 1568 30 100.0 36 .............................. GCAACGTCTTTACGTCCGTTCTCTCAGACTTAACCA 1502 30 100.0 35 .............................. CAGCTTGCCGTCCACCGCGCCAACGTAGCTACAGG 1437 30 100.0 35 .............................. TTGCAAGTATTACCCGTATCTTTTTACCTTTTACA 1372 30 100.0 35 .............................. AGTCTTCCCCATCCAAACCATCACACCCCTTTCTT 1307 30 100.0 36 .............................. TCCTTTCAGAAACAGCTGACAGCCAACAAGAAACCC 1241 30 100.0 37 .............................. GCGATGCTTTGACTGCGGACAGATTCTATGAAATATC 1174 30 100.0 37 .............................. TGACGGGGGAGGGGAGTATGTTCAAACAGCCATGTAA 1107 30 100.0 35 .............................. TGCGCACGAGGGCGTCTAAAATTTGTTCGAGCATC 1042 30 100.0 36 .............................. TCGCAGACACTACAGACCCCTTCCTCCAAACATTAC 976 30 100.0 37 .............................. TATTCTTTTTTTCTCAATATATTCTTCAATACTTTTT 909 30 100.0 37 .............................. TCGCCCACGTGTGCCGCGCCCAATATATCGACAACTC 842 30 100.0 35 .............................. AAATCTAAAAGAAATTTCGAAAGAGTCGCTCGATT 777 30 100.0 35 .............................. GTAGCCGATCTTGTTCTTGTACTGCTCGAGCCGAT 712 30 100.0 36 .............................. TATAAAACAATCACTATAGACGACTTCTATAGCGAT 646 30 100.0 36 .............................. AGATATTGAAAGCTAAATGTTTCGCGAAGCAGCTGT 580 30 100.0 36 .............................. TATAAATAAATCAATTAAACAATATCAAATGAAGTG 514 30 100.0 34 .............................. ACGAATATCTTGCTAAATCCATCAGCTTTCATCA 450 30 100.0 37 .............................. TATTCGTAAGTAGCACAAATTATCGCTTCTATTTACA 383 30 100.0 35 .............................. AACGAATATCTTGCTAAATCCATCAGCTTTCATCA 318 30 100.0 36 .............................. ACTATAAAAGAAATTCCAAAGGAGCATGATTCCGAG 252 30 100.0 35 .............................. TGAGCATCAAGAAACAGAGAATATATCGATGCAAG 187 30 100.0 34 .............................. TAGCAGACGAGGACGATTTTTTCAATGTAGTGAA 123 30 100.0 36 .............................. AATGAGATGCGGGTATTGGAGATTGAAACGAGGCTT 57 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 56 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATA # Right flank : TTGTTCAAACTATATACAGATGATATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 13399-13566 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLT01000013.1 Porphyromonas gingivalis strain WW2885 NODE_13_length_47414_cov_35.9371_ID_71053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13399 36 100.0 30 .................................... ACAGATGCAGAGGGTTGTTTCAGTTCTATG 13465 36 100.0 30 .................................... TAGGAACCTATAAAGAAGAGGAATAGATAT 13531 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 35 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGGGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAATCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAAAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //