Array 1 482005-483496 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJO01000002.1 Salmonella enterica subsp. enterica serovar Blockley strain 163013 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 482005 29 96.6 32 ..A.......................... GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 482066 29 96.6 32 ..A.......................... CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 482127 29 96.6 32 ..A.......................... TTACCTGCACTGCGCCAGCGATTTTCTATTAA 482188 29 93.1 32 ..A............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 482249 29 96.6 32 ..A.......................... GCACGGATATGGTTGACTGCATTTCGCTGAAC 482310 29 96.6 32 ..A.......................... GATGCGATCAGGCTGGCGATCAAGCAGATGTC 482371 29 96.6 32 ..A.......................... GATGCGATCAGGCTGGCGATCAAGCAGATGTC 482432 29 96.6 32 ..A.......................... ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 482493 29 96.6 32 ..A.......................... GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 482554 29 96.6 32 ..A.......................... TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 482615 29 96.6 32 ..A.......................... GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 482676 29 100.0 32 ............................. CGAGAGATCATAGACCAATGGACTGAAAGACT 482737 29 100.0 32 ............................. AATTGATCACAATCCTGTATAAGCTGCGCAAA 482798 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 482859 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 482920 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 482981 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 483042 29 96.6 32 ........................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 483103 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 483164 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 483225 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 483286 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 483347 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 483408 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 483469 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 499767-500651 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJO01000002.1 Salmonella enterica subsp. enterica serovar Blockley strain 163013 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 499767 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 499828 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 499889 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 499950 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 500012 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 500073 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 500134 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 500195 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 500256 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 500317 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 500378 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 500439 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 500500 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 500561 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 500622 29 93.1 0 ............TC............... | A [500649] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //