Array 1 149653-148184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXIC01000003.1 Streptomyces sp. RTd22 LGO_SPS1_AS3_CO012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 149652 29 100.0 37 ............................. ATCACCAAGACGACCCCGCCGGTCCAGCTTGTGACGC 149586 29 100.0 34 ............................. CAGGGGAACGGGACGGGGACGTGGCAGTACTCCG 149523 29 100.0 37 ............................. ACGATGACGACTTCGGCGAAGTGGTCCGAGAGGACGC 149457 29 100.0 37 ............................. CCCGGGAGCGGAACGCCAACCGGCGCGCTGTCCTCGT 149391 29 100.0 37 ............................. ACGCCGACCAGGCCCACGAGTACGACGACGGCTACGG 149325 29 100.0 40 ............................. AGACCATCCGCTACACAGCCGACGTCGTAGCCGTCACCCC 149256 29 100.0 37 ............................. TGGACCAGGTGCTCGGCCGTGGCTACCGGGCGAGCGG 149190 29 100.0 35 ............................. CCCTGGTCGTGGTCGCCCATGACTCCCTCGTCCTC 149126 29 100.0 36 ............................. TCGGTGAGGGCGATGGAGACGAGACCGCGGTTGCTG 149061 29 100.0 35 ............................. TGCGGGGCGAGCTGCCCGAGGGCGGTGGTCATCTG 148997 29 100.0 37 ............................. CCAAGGGCGTGGGAGGCGCGGGGGGCGCGGGGGTCAG 148931 29 96.6 39 .......C..................... CCGGTATCAGGATCTCCCAATCCAACCCCGGGTCAGCGC 148863 29 100.0 36 ............................. GACATGGGCAGGTCTGGGTGCAGCATCGCGCCGGTG 148798 29 100.0 35 ............................. GCCGGTCGTGGATCGCGCAGGACCCCGCGCGCGCG 148734 29 100.0 36 ............................. AGGGTGGGGTCGATCCAGTCGCCGCAGAAGCAGCAG 148669 29 100.0 36 ............................. ACCTGCATGGAGCGGGTCGACAGGGCGTCGAGCAGC 148604 29 100.0 36 ............................. AGCTTGCACAGGCCCGGGGTGGCGCCGAGGCGGAAC 148539 29 100.0 36 ............................. GCTGGGGGAGGCGTGACGCGCGACGCGGGTACAGCC 148474 29 100.0 36 ............................. CGCATACCGAGCTGGAGCACCGGGCCCCCGAGCCGG 148409 29 100.0 35 ............................. GTGAGGTAGCAGGTGACGTACGACGGGGCTTCGTT 148345 29 100.0 39 ............................. GGCGCGGTGAAGCCGTACGCCACGATGACGTCATTGCCC 148277 29 96.6 36 .......................T..... GCGATCACGGTGACGGTGCGGCCGGGGCTGCGGCGG 148212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 23 29 99.7 36 GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : GCGACGACCGTCTACCACCGCATGCTCAAGCGGAAGGTCAGTTACGAGGAACTCATCCACCTCGAAGCCCTCAAGATCGTCCGCATGTGCCTCGAAGGCAAGCCGTACAAGCCCTTCCGCCCCTGGTGGTGATCAGCATGTTCGTGATCCTTGTCTATGACACCGCCGTCGAACGCAATCCCAAGGTGCTCAAGACCTGCCGCAAGTACCTCCTCTGGACGCAGCGCAGCGTTTTCCAGGGCGAACTCTCCACTGCCCAGTACCGCGCGCTCATGGCCGCCCTGAACACCACCATCGACCCGGACTACGACAGCATCGTGACCTACACGGCCAGGTCCCCCGACATGGTCGAGTCCAGTACCCTCGGAGTCGCCCTGGGCGGCCCCGGCGACATCCTGTGAATCGCTCTGACCTGCGCAGATGCACTACCGTCGGATCGCTGCAAAATGGCGCTCGCAGATGCGATTGTTTGGCATTCTGACCTGCGACTTTACCGTCGG # Right flank : ACCACTTTCTCGACCATGCCCGCCTTGACCAGGACGCAGCCCTGAGGGTTTCGCGACTCGGACGTCGTGGCTGTGGGACTCATCAGTCCAGGAGTGGGCTCGGCGCAAGCCCCTCTCGACCACGGCCACCGCTCACAGGCCACCTCGTCTGCGAAGTTGCCCGGCAGGTCTGCATCTCGTAGTGATCATCAACGCATGAGGCTGAAGACCACTGCCGCGGCGAGCCCGCCCACGAACGCGCCGACGACCGTCTGAGCGGGTGTGTGGTCGCGGAGGGCGACGCGGGACCAGCCGATCAGGGCGACTCCGGCGAACAGCGGCGCCATGTAGAGGCCATAGGCGATGAGCAGGACTACGGCGACACCCGACGCGACGGCGGTGTGGACGGATACCTTCCACCACACGGTCACCGTGATGGTCAGGGTGAGGCCGGCGAGCATGGCGAGGACGAGGGCGAGGACTTCGCGGGGTCCGTCGAGCGCGACCAGGAGGCCGATGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 158959-158146 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXIC01000003.1 Streptomyces sp. RTd22 LGO_SPS1_AS3_CO012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 158958 29 93.1 36 ....T.C...................... GTGGAGGGGCCAAACCTTCGGCCGCCAGCCCATCGC 158893 29 86.2 35 A....T......T...A............ CCAGTTGCCCCTTGCATCCGCGTACCCGGACCGTA 158829 29 86.2 35 .....T.......A...........T.G. CCGACTGGCGTCACACGATCCACGCCAGCGCGCCG 158765 29 96.6 35 .....T....................... AAGTCCATCTCGGGCGTGATCAACGGGACGCCGTT 158701 29 100.0 37 ............................. ATGTCCGCGCACGTCGACCGGCGGGGCAGTCCGCGAC 158635 29 100.0 37 ............................. CCGGGGGATGGACGGTCAGCCGTGGGGTGCGCTGGTA C [158628] 158568 29 100.0 36 ............................. GGACGGGGGTCAGGGTGTCCCCCACCACCGTGTTGG 158503 29 100.0 37 ............................. TCGAATGGGAGGGCGAGCTGAAGGACACCCTGCTGGG 158437 29 100.0 36 ............................. TGGTGGCTGGCCGGGTGTTCATCACCCCGTCCGCCC 158372 29 100.0 37 ............................. TCGACGAAGGCCCCGTCACCATCAGCGGCAAGTCGCT 158306 29 100.0 38 ............................. CGCCACGCTCCTGTCCCTGGCCTGCTTGCGGGACCACT 158239 29 100.0 36 ............................. CGGCTCGGTCGGCGGCCATCCCCGGGCCGCGCCCCG 158174 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.1 36 GTTGCGACCCCTCCAGGGGTGATGACGAC # Left flank : CGCCCGCCGCACCTCGATCTCCGACAGCACCCACGTCCGCGACCCGGTCTCCTCCAAGAACTCCGCCGACGGCTCTGGCTGCACCCCTCCCCACCAGTGCGTATCCCCGGCCGCCAGGGTGTAGCCGAACACGAACCCGACGAGCCGTCCCTCGTCCCGCGCAACCACCAGGGTGAAGCCAGGTCGCGTGAGCTGCTTTTTCGCCCGGCGGCGGAACGCGGACGTCTTTTCCTCGCCTGGCTCCGCCCCGTACGCGTCCGCGTAAGCGTCACACAACTCCTCCAGCAGCGCGGTGGCATCCTCGCCGTCGTGGTGCGTCAGGGACACGGTGTTCATCGTCATGTCGGCAAGGCTAAGACGGTCCACCACGCGGGAACAGGGGCCCATACCCCACCAGGCGATCAGGCGTCTCTGAGGTCGCAGCTTCAGAGGTCCGCACAAACACGATGACCGAACCCTGCATATTGTTCAGGAATTAGCGTCACCGTCACCACGAAGAG # Right flank : CCGAGGGTAAAGCCGCAGGTCGGAGCTGCCTTGCGGTGGCATTCCGGAACAGGTTTTGCAGCGATCCGGCGGTAGTGCATCAGTGCAGGTCAGAGCGATGAGCTTTCGGGGTGCCTCGTGCTGTGCCGAGTGGCTGTCAGTGGTGCCCGGTAGTTTGCGGGTTCGGTTCCACTGAGGGCAACTCCGTCAGCAGCGCTAGAGTCCTGAAGTACAGCTTGTAGCATGGAAAAATACACTTCGCTAGATTTGGTGGTAATCATCCCTTACCTTCCTGAGTTCAGCTAAGGTCCGATTCATCGCAGTGCCCACCCTGGGGGACATCGGTGGGCACTGGACAGAGCCGTTTGGGGGTGTAATGCGGATCAGGGTGGACGTCGATACGGACACACCAAGCCTGCGATGGGAGGACGTGCACGGGCCAGCGCGGGCGGTGATGTACGAGCTGCTCGGCAGCCAGGACACAGTCTTGGCCCGGACGTTGCACGACGAGGGGTGGAAGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCCAGGGGTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //