Array 1 4-1556 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRG01000709.1 Streptomyces prasinopilosus strain NRRL B-2711 B2711_contig_709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 82.8 32 ACCAG........................ TGCATGTCGCGGGCCGCCGTGTCGGCGCCGGA 65 29 100.0 32 ............................. CGGGACAAGGTGCTGGCCGCTGTCCAGACCGG 126 29 100.0 32 ............................. CTGCCGCATGAGCGCGCCGAACGCGAGCAGGG 187 29 100.0 32 ............................. CGTCAACCACTCAGGCGTGGACTGTGAGTCCA 248 29 100.0 32 ............................. TCGGCGACCAGGCTGGCGAACTCGGCCTCGAT 309 29 100.0 31 ............................. GCTCGACGACCAGCGGCTCGCGGAGATCGAC 369 29 100.0 32 ............................. ACCCGACACGTCCTCACCTTCATCGTCCCCCA 430 29 100.0 32 ............................. CACGAGCACGGCCGCCGTGGTGATCCACTGGA 491 29 100.0 32 ............................. TTCACCGACGTCGTGGTGACGTCGGACGCCTT 552 29 100.0 32 ............................. AGGGACCCGGTCTGCGGGTCGTAGCGCCAGTC 613 29 100.0 32 ............................. GTCACCAGCACGGGCTTCACCGTGTGGCTGAC 674 29 100.0 32 ............................. GCCATGGTCAGCAGCGCGACCACCAGCAACAC 735 29 100.0 32 ............................. ACGCCCGGCGCCAAGGGCATGGACGTCTACCC 796 29 100.0 32 ............................. TGCCCCACGACCAACCCCCCGGGGAGCACCTG 857 29 100.0 32 ............................. CCCGCGAGCCTCCGGAAGATCAGCGGCGCACA 918 29 100.0 32 ............................. TGTGGGCGGTGGCCGCGTCGGGCACCACATCG 979 29 100.0 32 ............................. CAGGCCACGAGGTACGGCATACCGGGCGCACA 1040 29 100.0 32 ............................. GTGCCCAACTCGGCCGACGCGCCCGGCATCCA 1101 29 96.6 32 .C........................... ACGGCCCGGTGGTTCGGGCGCACGACGACGCA 1162 29 100.0 32 ............................. GTCGAGAGCAGGGGCGGGGACGGCGTGGTGGT 1223 29 100.0 32 ............................. TCCAGCGCGCTGCCGATGCTGCCGCTGCCGCA 1284 29 96.6 32 .........................C... CGCGACCGGAAGGCGAGGTAGGACTGTGGCTC 1345 29 96.6 32 ................T............ CAGGCCGCCGCGGCGCGGGTGAGGGGCAAGTC 1406 29 93.1 32 ..........T.T................ TCCGGCACCTGCGCCATCACCGACAGCAGCAC 1467 29 93.1 32 ........T........A........... TGGTCGAAGGCCGACCAAGAGCCGGCCGAGTG 1528 29 79.3 0 ..........T.......AA.GCC..... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 97.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGGA # Right flank : CGGGTCGAGTCGCTCGGTCCACCCTTCGGCGACGTGTTCCCGCCGGCACTCTCCTTGTGCTTCGCGGAGGCCGCCGCGACGGCCTCCTGCCCTCGCGCCCCCTTATCGCCGGTTCGAGACGGGTGCCGTCTCGGAGGCGGAGGCCGAGGCGGGGGCGTCGCGCAGGCCGAGTCGCAGGTGTTCCACGTGGAAGAGGGCCTGCTCCAGGAGTTCGGCGACGTGGTTGTCGTACAGCGAGTAGACGATGGAGCGGCCGTGGCGCTCGCCGGAGACCAGTCCCAGGTTGCGCAGCAGGCGCAGTTGGTGGGAGCAGGCGGAGGCCTCCATGCCGACGGAGTCGGCGAGGTCGCCGACCGAGCAGGGGCCTTCCTGGAGGCGGGCCAGGATGTACAGGCGTGAGGGGGTGGCCAGGGCCTGGAGGGTCGCGGCGACGTCGGTCGCCCCCGCCGCGTCCAGTCGCTCGCGCGGGGTGGCGTCGTTCCTGCCGTCGGCTCCGTGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9514-9726 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRG01000091.1 Streptomyces prasinopilosus strain NRRL B-2711 B2711_contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9514 29 100.0 32 ............................. CACTGGAAGCTCGCGATCGAGTCGCACGCCGC 9575 29 100.0 32 ............................. CGGATGCTCTTCTCCTGCTGGATCAGCCCGGT 9636 29 100.0 32 ............................. TGCCGGCAGCGGGCCTACGAGGCTCGGAAGCT 9697 29 79.3 0 ......................CA.ATTT | G [9719] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCGGGGGTGGCCTTGCCTATGTCGTGCACACCCGTCAGCCACACGACGAGGGCCCGCGCGTCCGACTCGCCCCCCGGCAACGCCTCGGCCACCAACCGCCGCACCCCCGCAGGCAGCCACCGGTCCCACAACAGGCCGGCCACCGCCGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCGTCGGTGTCCCGATCATGCTTGGCCCACACTGTCCGCGCCGGCCCCCCGAGCCGACCCAGCAGGTCAGATCGGGGGATCCCCCCATTGCTCATGAGGGATTGATACAGGGGGAGACGGGCTCCACACACCAAAATCGGCAAAGAGGCGAAAGCGGGGGCAGGAGACGGGATCGGGACTTACGATGATCGGCTCACCACCGGTTCAGTGAGAATCACCCGCGAGACGAAGTAGCGCCATATGTCCTATTTATCGAGATCTGCAAAAGTCTCCGAAACGACGCATCCGCGAGAGTAAAACCGCAGGTCGCCCAGT # Right flank : TCAGAGGGCGTCCCGCGTCACGTCAAACGCCCCCGGCGCTCCCTGAGCGCGCCGACGAAAGTGGTGAAGGCGAGGGTGGGGACCGAGAAGGAGGCACGGGAGAGGCGCTTCGAGTCACGGATGACTATGTGTCCGCCCAAGTCCGCGATCTCCACGCAGTCATTGCCCTCTCCACCCCCTGAGTAGGAAGACTTGCGCCATTGCGTAGGGGCGGTCATCGGATACCTCACAGCTCTTTGGCCAGCTGATGAATGAGGTCACGCGACGGCTCCGGTGCGAGTGACCCGGCCCTTACCCTATGGAACAGGTCTTGGAAATGCGCTAGTTGGGCTTCACCGTCAAGGAAGACCGTTCCATGGGGAGCGTCGCGCACCACAGTGTCCAGGCGCGGGACCGGACCACCCAGGCGCACCATGGTGCTTCCCGCACCCGCGAAGTCGTCCAGCGCGAAAGGGATGACCCTGACGGTGACGTGGTCGGCCTCGGACATCTCCAGGATG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //