Array 1 35414-36109 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZP01000020.1 Streptococcus halichoeri strain S185 NODE_20_length_38776_cov_89.327020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35414 36 100.0 30 .................................... CTAATTTTATTGGCTTTGTAGGATACTTAG 35480 36 100.0 30 .................................... AACAGCGTAAGAAGCCCAATCTCGGCTTTG 35546 36 100.0 30 .................................... GTAAGCTTTAAGGTCGCGTCCAGAACCATC 35612 36 100.0 30 .................................... CGATAATTTCGTTATCAGCATTCATCCAAT 35678 36 100.0 30 .................................... TCTAGAAGAGGCTTTGCAACGCAAAGCTGT 35744 36 100.0 30 .................................... CCGCCGATTAGTTAAAGATTTGTCTAAAGT 35810 36 100.0 30 .................................... ATGGGATTTAGTCAAACAAAAAACGAGTTG 35876 36 97.2 30 ...............A.................... ATGCATTTCTTGGAGGAAGGGAGCTAAGGA 35942 36 100.0 30 .................................... TTACAGACGATTGGGAATTTAAGGTTTTTA 36008 36 100.0 30 .................................... CTTGCCCTGCTTTATCGTCAAAAATTGGTT 36074 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATAACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTGTTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTCCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATACTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CGAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAGAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 750-186 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZP01000039.1 Streptococcus halichoeri strain S185 NODE_39_length_10458_cov_80.139967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 749 36 100.0 30 .................................... TCGTGGACCAAGCCGAAATTTACGGCGATA 683 36 100.0 30 .................................... AATACTGCGCTAATTACACCGGTCAATGAT 617 36 100.0 30 .................................... AAAGCAGTCAAGCTCTCTGGCACAGCAACT 551 36 100.0 30 .................................... TTCAACTATTTCAGTATCGTCATAGATGCT 485 36 100.0 30 .................................... CCTTCAAAAACATTTTAATATATACGGATT 419 36 97.2 30 ...............T.................... GCTTGCGTGAGCGATAATACCATTCGGAAA 353 36 97.2 30 ...............T.................... TGAGACTTTGGAAGAAAAACAATTTTTAGC 287 36 97.2 30 ...............T.................... TGGTAATGAACTTTACGGGCTTTAGTACAT 221 36 83.3 0 ...............T.............TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GCTTTAGAGCTATGTAGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGCTTTTGCCGTATAATAGTGCTATGAACGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCGTTTGATTGCTAAAACTAAAAATAAATTTGAAAACTGTACCTTTGTCAATGATGTGAGACCAAAGCAGGGATTGAAAGAAACTGAATATGCTATTCTCTAGAAGGAGCTAGCTGCTTCTAGTTTTTTTCTTGTTTCGATGGGTGAGAGCCAGTCAAGGGTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTAGTTTTGAATGGTCCCAAAAC # Alternate repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //