Array 1 986-1744 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNDB01000073.1 Parabacteroides merdae strain BIOML-A15 scaffold73_size18258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 986 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 1051 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 1118 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 1184 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 1249 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 1316 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 1381 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 1446 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 1513 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 1581 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 1647 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 1713 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.7 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTATTTA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1075-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNDB01000013.1 Parabacteroides merdae strain BIOML-A15 scaffold13_size91987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1074 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 1009 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 943 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 877 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 811 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 744 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 678 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 612 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 546 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 481 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 415 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 348 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 281 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 215 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 149 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 83 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 100.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CAATGAATATATTTATACTTTAACAGAACGTTTGGGTCGTACCTTATATAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8567-6755 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNDB01000013.1 Parabacteroides merdae strain BIOML-A15 scaffold13_size91987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8566 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 8500 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 8434 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 8368 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 8301 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 8236 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 8169 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 8105 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 8038 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 7972 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 7907 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 7842 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 7776 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 7708 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 7642 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 7576 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 7511 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 7446 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 7380 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 7314 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 7250 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 7186 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 7119 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 7055 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 6989 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 6922 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 6857 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 6786 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //