Array 1 1005-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYA01000098.1 Cronobacter sakazakii strain MOD1-comp46 csakComp46_contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1004 28 96.6 32 -............................ GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 944 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 883 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 822 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 761 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 700 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 639 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 578 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 517 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 456 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 395 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 334 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 273 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 212 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 151 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 90 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 762-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYA01000035.1 Cronobacter sakazakii strain MOD1-comp46 csakComp46_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 761 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 700 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 639 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 578 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 517 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 456 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 395 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 334 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 273 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 212 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 151 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 90 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82251-82096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYA01000036.1 Cronobacter sakazakii strain MOD1-comp46 csakComp46_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 82250 33 100.0 27 ................................. GCAGCCCACAGAGCGGACGTTGATGGG 82190 33 100.0 29 ................................. ACGGCCCACGGAACAGGCGTTAATGGGGA 82128 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================= ================== 3 33 100.0 28 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Left flank : TGGGTTGCGGTTACGGCGGGTGCGAGGGTGACGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGA # Right flank : ATCACAGATAATCACACCTCACCACAACCCCTCCCGCCGCAACGAGAAGAGCTTACGACGCGGCGATAAACAGCTCGCGCAGTTGATGAAGCTTATCGCGCAGTTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGCTGCACCATCTGCGCTTCAAGCTGATGAATTTTCTGCTGCAACGCTTTTGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTGTTAAGCCCCTGCGGCACAATACCGTGCTCTTCGTTATACGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCCTTGCCGTTCACGTTACGCGCCGCACGGCCAATCGTCTGAATAAGAGAACGTTCGGAGCGCAGGAAGCCCTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 15163-15014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYA01000037.1 Cronobacter sakazakii strain MOD1-comp46 csakComp46_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15162 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 15102 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 15041 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18845-19606 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYA01000044.1 Cronobacter sakazakii strain MOD1-comp46 csakComp46_contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18845 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 18906 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 18967 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 19028 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 19089 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 19150 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 19211 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 19272 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 19333 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 19394 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 19456 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 19517 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 19578 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //