Array 1 18816-17786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATC01000004.1 Streptococcus uberis B362 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 18815 36 100.0 34 .................................... AAAACACTGGTATTGCACAGTCGAAAATTTCAAG 18745 36 100.0 35 .................................... GCGTTCGATGAAAGACTTGGATTTGCTCCAATTTT 18674 36 100.0 33 .................................... AAACTCTGGTTTATTGCAAGAGAATAGTAAAGC 18605 36 100.0 32 .................................... GATGACGATTATATCTATTGTGAAAATATTGA 18537 36 100.0 36 .................................... AATTTTAGAAATAATGATAGATAGAGACTTGACAGA 18465 36 100.0 37 .................................... TTGAAAAGTCTTAACAAATTTGTGTCCGAACAGTTAA 18392 36 100.0 35 .................................... CTTTCTAGATACTATGATAAAGATATTTTTGTCAA 18321 36 100.0 35 .................................... CATTAGCTTTAACGGATTACTTTCTAAATACTATG 18250 36 100.0 33 .................................... TCAAACAGTAAGTACAATCACGGGTCATTAAAC 18181 36 100.0 34 .................................... AAAAATAAAAAAACTTAAAAAAGGGGGTTGACAA 18111 36 97.2 39 ...................................G ATTTGAATACCTTAAATTCTATGAAGTAGATGAAGATAG 18036 36 100.0 36 .................................... GATTCTATTGACGAATTAGAATGGAATAGCGATGTT 17964 36 100.0 37 .................................... ACTTTGACCACTCAAACAGTAAGTATAATCATGGTTC 17891 36 100.0 34 .................................... CTAAACCTTGAAAACTTATATAGTTAAATAAAGC 17821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 99.8 35 GTTTCCGACCCTTCTCAGGGAATATGGGTTGTTAAT # Left flank : TTTCTATATTTTCTAATCTAATTGATTTTAATCCAATTAATAAGGGAGAAATTTTTCTTTCAGCCTCCTCATTTAATAACGAAACCTCCCAGACTACCGATTCTGCCTCTCTATATACAAAAGATGCATAGGGATTTGTCTTATTCTCATGTAGATATTTACTATAACTTTTATCAAGTTCTCCCATCAAAAAACCATGAAGTTTTAATGCAAGTATATTAGTTGAAACATCTGAACTAGATAAATAAAGTTTTATTTTTTTCATCACGCAAAAAACCACAAAAATCATGAAAAGCAAGTACTTTTCACCCTCTTGTGGCGCCCCTTAATTATTTTATAAAAAGAAAATTTCCTTAATATGATTATACAAAGAAAGCGTTTTACTGTCAATGACAAAAATATAAATTAATTAAAAATTTTAATGGATACAGCAAACTTAATCAAAATTTATCAAGGTTTGCTTTAACAACAAAAAGGATACTATAAAGCATTATACAAAC # Right flank : AGCATATTTAGTGAAGACTATTTTCAATAATACAAGATGTGGTGTTTTCATAAAAAAAGGCAAATTTTTTATAAAAATATATATTCAGGCTCAATTTCAACACTTTGATAGTCACAAAAGGAATAGACATCATCTTTTCGACATTTGTAAATGATGATACTATCACCAGGTATTTTTGTAGTCAATTTTTCAATTTCCAATACTAGGGAACGGTATTCAATTTCTGAAAGTTGCATTTCAAAACACGACTTTTGAACCCTGAGACCATACCCCGTAAGCAATTGAGACAACTTAACTCTTGTCTTTGAACTCATTATATCATAAATGACAAGACAAAAAATATTCTTTTGCTTCGCAAATGCTGGATCTCCTTCTTTTAAATTAAAATATTGGCTCATTTTATTCTTCCCTATAAATATCTTTAAACAGTTTTGAATCTTTATTATTAAAACAATCCATTAAACTTTGTAATTGAATTTCAACCATGTATGGAAAAGTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGACCCTTCTCAGGGAATATGGGTTGTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 661666-656155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATC01000006.1 Streptococcus uberis B362 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 661665 36 100.0 30 .................................... TTTAGTCAACAAAGCAGTTTTAATTGGTCA 661599 36 100.0 30 .................................... CTGTACCATAAGGGTATGGGTCTAATACAC 661533 36 100.0 30 .................................... TTTACTAGGCGTAGTTCTAGTATATTGGCA 661467 36 100.0 30 .................................... AAGCTATGGATGTTATCGGTGAAGGTGTAC 661401 36 100.0 30 .................................... AATTCTTGGTTCATACTTAATCTCTGCGAC 661335 36 100.0 30 .................................... ATAAAGTACCTTCTTCTTGTCGATGTCGTC 661269 36 100.0 30 .................................... CTTATTTCGTAAGCGCTAGCAATTGATTCG 661203 36 100.0 30 .................................... CATACCTTGTGTTTTCACCCCACCGCAAGT 661137 36 100.0 30 .................................... TAGCCAATGGTCAACAACCAGTTGAAATTC 661071 36 100.0 29 .................................... GCAAATGCAATTTGAGTTTTTATTGCCGA 661006 36 100.0 30 .................................... CATTCGTTTCTAATACAGGGCGTAAATCTA 660940 36 100.0 30 .................................... ATGATATAGTAGTGATAAAGAACTGTTTAC 660874 36 100.0 30 .................................... AAGTACATTCTTGTTACTAATGGCTTTCCT 660808 36 100.0 30 .................................... TCAGATTTGGATTTACCGTTCTAAGAGGTG 660742 36 100.0 30 .................................... AAAAACTGTACACAGTTGAGATACCAAATC 660676 36 100.0 29 .................................... TGAGGCAAAGTGGCAAACTTGGTACAACC 660611 36 100.0 30 .................................... CGGAGAGCTTGTATGATTGTATTACTCGCA 660545 36 100.0 30 .................................... CCCAACCTCGCCATTGACATCAGCTTTTGC 660479 36 100.0 30 .................................... CGTTGTTTGTTAGTCGAGGTGATAGCGCCT 660413 36 100.0 30 .................................... CATGGCTCGTTTCGATTATTTACAGTCACA 660347 36 100.0 30 .................................... GCAATGAAATCATAGATGCTTACAACAAAC 660281 36 100.0 30 .................................... TCCAATTTCGAACAATATAGTAAGGAGGTA 660215 36 100.0 30 .................................... ATTTGATGAAGTTGCTAAGATGTGGCTAGA 660149 36 100.0 30 .................................... ATTTAAATAGCAATGATGCACAAGATACGA 660083 36 100.0 30 .................................... GTTATCAAGACTCAAGTCAGAAGCACACCA 660017 36 100.0 30 .................................... ATTATTGAAAAGTTTTGGGCCGATAATGTC 659951 36 100.0 30 .................................... AAGTTTTGCCACAACGTATTGAAGCTACAA 659885 36 100.0 30 .................................... AGCCTCTTCATCTGTGATATTTTGCACTTT 659819 36 100.0 30 .................................... CACACCCGAAGTTTTCAACCAATATATGGA 659753 36 100.0 30 .................................... AAAAGTTTCTAAACCTATTTCACGATTATA 659687 36 100.0 30 .................................... CAGTGCGCTAGCAATGCACTATCCATTAAA 659621 36 100.0 30 .................................... ATGTTGTTAGAGTCAAGAAGTACAGCAAGC 659555 36 100.0 30 .................................... CACTCAGACAAGCAAAATGATTTATGATGT 659489 36 100.0 30 .................................... TGCTCAGTTGTTACAAGAGGCAGAGAGTAC 659423 36 100.0 30 .................................... AGTCGCATTAGTTGTCTTATCAGAATTTCC 659357 36 100.0 30 .................................... TTCGAAGACTGATGAAGGTGCTAAAGTTCG 659291 36 100.0 30 .................................... TTAACGAAATCTTTTAAGGAGAATATTATG 659225 36 97.2 30 ......................T............. ACCTTATCCCTCAAACTTCCAAGCCAACTT 659159 36 100.0 30 .................................... TTGAGATAGTCTTTTGCTTTCATACTGATG 659093 36 100.0 30 .................................... CACTGATTGAATTATTGGGTCTACCGTCCT 659027 36 100.0 30 .................................... ACAATTTTTCTAAACTGCATCAAGCAGATT 658961 36 100.0 30 .................................... TTGGACATATCGACACTGTACGAGTAACTA 658895 36 100.0 30 .................................... ACATGCTTAGAAAACAGTCAAATAACCTTT 658829 36 100.0 30 .................................... ACTTCTTTAATTTGGTCATAGTCTGATACC 658763 36 100.0 30 .................................... TGCTTACAAGCGTGCAGGACTGTCAGGGAC 658697 36 100.0 30 .................................... TAGGTAATATGTACACCGATATCGACGGTG 658631 36 100.0 30 .................................... TATCCAACAGCTTTAGCGGATGTAAGTAAG 658565 36 100.0 30 .................................... CAATTCGATACCAGGCGGAACAATCGATAA 658499 36 100.0 30 .................................... ACAAGTAGATGCTTTGATTGCAAGCTACAA 658433 36 100.0 30 .................................... TGGATGTTTGATTATGATGATGACAAGTCT 658367 36 100.0 30 .................................... CTCCTTCCAATTAGCTGGGTAGTCAGATGG 658301 36 100.0 30 .................................... TTTAGCATGATTTTTCCTTTTTCACTCCCA 658235 36 100.0 29 .................................... TTACCAGACTCTGAGGGAAATACTCACTA 658170 36 100.0 30 .................................... AAAAACGATTGAATGGTACAAAGATGAGGA 658104 36 100.0 30 .................................... ATACTAAGCCAATAGCTGTTTATGCGACTG 658038 36 100.0 30 .................................... TTCCAAAATGCGATTGGGTCTTTTGCGTCT 657972 36 100.0 30 .................................... TACTCAGCCCAATGTAGCTTATAACCAAAC 657906 36 100.0 30 .................................... CAATCTTTCCGTCTGCATTAAACTGCAATT 657840 36 100.0 30 .................................... AAGGTCTAAAAGGTACTGTTGACCAAATTA 657774 36 100.0 30 .................................... TGCTTACAAGCGTGCAGGGCTATCAGGGAC 657708 36 100.0 30 .................................... TTCCATGACACCTGTTTGATTGACTAGTCC 657642 36 100.0 30 .................................... TCATTGAACTTTCTTTACCTAGATCATCCA 657576 36 100.0 30 .................................... CAAGTCGGAGATATGAAAGGAGGTGAGACT 657510 36 100.0 31 .................................... CGAATGGAGATGAACGACAATATATCAATAA 657443 36 100.0 30 .................................... CAAATGTAATGGTTAAAGTGGATGCGAATG 657377 36 100.0 30 .................................... AACACACAAATTATGAAAAAGACTTCGGAT 657311 36 100.0 30 .................................... TAATACCAGCATCTGGAATAACATCAACAT 657245 36 100.0 30 .................................... GTAGGTTTAAGTGGAGAAGCCTCAGCAGGT 657179 36 100.0 29 .................................... TTATGTCCTTGCGTTCGTGCAGTCTTACT 657114 36 100.0 30 .................................... CTGTTACCGCCAACTTGGATTTTAGAAAGC 657048 36 100.0 30 .................................... CCAACCTTATCAGTCGATTCAAACAGAGTA 656982 36 100.0 30 .................................... CCAACCTTATCAGTCGATTCAAACAGAGTA 656916 36 100.0 30 .................................... ATTGAAAGAATTACCGTTATTGTTCGCAAC 656850 36 100.0 30 .................................... CGATTAAAAATAATTTCTTTAATAACTCCA 656784 36 100.0 30 .................................... TTGTAGATGATAAAAGCGTATTATCACTTT 656718 36 100.0 30 .................................... CAAAACGCGATTGAGTTATATGATAAAGGT 656652 36 100.0 30 .................................... CGTATTTCGGCATTTTAGACAAGTGTAAGA 656586 36 100.0 30 .................................... TGGTAATAACTTAGCTGTTGGAACTAGCTC 656520 36 100.0 30 .................................... CTTACATTGATTTCAAAAACAATGAGTCTA 656454 36 100.0 30 .................................... ATAGATTTGCTAAGTTAAATAAGGTACTGA 656388 36 100.0 30 .................................... ACTGCATCAGCTTCATCTTTTAGCCCGTAC 656322 36 100.0 30 .................................... ATCGGAAACAATTGTGCATCTCTGACTTGG 656256 36 100.0 30 .................................... ACATTACCTAAGCCAGCGAATCCACCTCTT 656190 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 84 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGCTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATGTCGAGAAATACATTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //