Array 1 23370-25652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000019.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23370 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 23436 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 23502 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 23568 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 23635 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 23702 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 23768 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 23835 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 23900 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 23966 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 24032 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 24098 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 24164 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 24230 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 24296 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 24362 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 24428 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 24494 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 24560 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 24626 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 24692 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 24758 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 24825 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 24891 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 24957 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 25023 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 25089 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 25155 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 25221 30 100.0 37 .............................. ACTTATCAAATAAATAATAATTCTCACCATCAAAATA 25288 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 25355 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 25422 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 25489 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 25555 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 25621 30 96.7 0 .............................T | TT [25644] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : ACATATAATGGGAGAGGAAAAATATGAAGGATTTAAAATTTGGTGGTAGGGGGGCTAGAAATGTATTACATAGTTGTTTATGACATAGCGGAAAAGAGGGTGAACAAAGTTTTAAAATTTATGCGAAAGTATTTGAATTGGGTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : TCACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCAGGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 86425-89113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000006.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 86425 30 100.0 38 .............................. ATGATAACTTCTCTGAAGCACCGTGTTTAAATCTTCTT 86493 30 100.0 35 .............................. AAACTGGGACCTGCATAATGTTCGCATTTATTTAT 86558 30 100.0 37 .............................. TAAATTTTTGGATACCCCCCCTCCATTTGAGAGAGTA 86625 30 100.0 37 .............................. ACTATGTTCTTTTGAAACTCAAAATCTAAAAGAGAAA 86692 30 100.0 36 .............................. TAAATAATTTTGATGAGATGTTCAGGGAGCAATTTA 86758 30 100.0 36 .............................. GAAACTAATTGTTCGCGCTTAATGGGGTCTACTTCC 86824 30 100.0 37 .............................. ATATCTCCTCTGCCCACCAACTTGATTAAAACACGGG 86891 30 100.0 36 .............................. ATTGTTTGTGTTAAAGTTTTATCAATCCTTTCTTTT 86957 30 100.0 35 .............................. TTCCAGACAACCGCACCTTTTCATCAAGGCGTTTA 87022 30 100.0 36 .............................. GTTTATAGGGATTATCAAAAACCCTCGCTGGGATAT 87088 30 100.0 38 .............................. TTAAAACCCTTTTATGTCTTCGCAAGAAATAATAAACT 87156 30 100.0 37 .............................. ATAAAAAAGATTATTGACCCGTTTTTAAATTCAACAT 87223 30 100.0 38 .............................. TTGAGGGCTACATCATAGCCCTGCGACCCAATAATAGT 87291 30 100.0 34 .............................. CAAGAAATAATAAACTTATTTGTACAACTTACGT 87355 30 100.0 37 .............................. ACGATTATAAGCCAAAAGTGCTAAATCGGGATTTTGA 87422 30 100.0 37 .............................. AAGTATTTGTCGCAGGGTCATACGCCTCATTCGTGGA 87489 30 100.0 37 .............................. ATAAATTATTTTATCCCAATATCTTCTTTCAATTTCA 87556 30 100.0 37 .............................. TTTACGCCGAATGACCTCAAAATTCTCTGAAGTTCTT 87623 30 100.0 39 .............................. ACGGGCATTGATTCAAATGGGGAAAGATCCCGCAAATTA 87692 30 100.0 35 .............................. TCGCTTGCAATAGCGGGGATTAACAAATCTTCTAT 87757 30 100.0 38 .............................. TCCAATAATGTTTAGCCCCCCACTCTTCTTCTCGTCCT 87825 30 100.0 37 .............................. GAAATTAATTGTTCACGCTTAATTGGGTCTACTTCCA 87892 30 100.0 37 .............................. GTAAAAACAATTGCTTCCCCAAATTCTTCTTTTGCTT 87959 30 100.0 39 .............................. CCTATCATGCCCTAAAATATATCCGCCACTTGTCGTTCT 88028 30 100.0 36 .............................. CGGGGCAAAATCAGCAATTGGAGCGAATTTTAACAC 88094 30 100.0 38 .............................. TGAAGTCGTTTGACAGCATTTAAAATCTCCTCATCAAT 88162 30 100.0 35 .............................. TTGGGAATGAAATAAAAAAGTGTATTGCTCACACC 88227 30 100.0 36 .............................. AAAAATATTCTAACTTCTTCACCCCTTACAAGTTTT 88293 30 100.0 36 .............................. TTTCATTTATAATCTCATCATTCTTAAATGGCTTTT 88359 30 100.0 36 .............................. GGATAAACCGCCCGTGGATGTGTGGGAGCAAATTAT 88425 30 100.0 36 .............................. TTATTTGTTTTTGAAAGGGACAATTTACAAGCATTA 88491 30 100.0 37 .............................. ACCTTTGCGATGACCAATTTATCCTTTACCCTCGCAA 88558 30 100.0 37 .............................. TTTAAGATTGCTTCTCAATGGGAGCAAAATTTATTTT 88625 30 100.0 35 .............................. AATTTGAAGAATTGCAAAATGAATATGAGCAACTC 88690 30 100.0 35 .............................. GCTGTTAAGTAGGGACGCCCCCCATAATTTACAAA 88755 30 100.0 35 .............................. AATTTATTTGCCTCCTGCTCAGCTTTCCGATTTAT 88820 30 100.0 37 .............................. TGGGGAAATTAAATCCGAAAGAAACGAAAGAAATCCT 88887 30 100.0 34 .............................. ATTTAGACTTTTGGGGAACAAATAAAACGACATT 88951 30 100.0 37 .............................. ATAAGTTGATTGATTTATTTGACAATAACATTGAATA 89018 30 100.0 36 .............................. TATAGTTTGGAACATAACTACCCGCTTTATTGAGAG 89084 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 100.0 36 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : AAGTTTGCAAATTATTGCGTAGATATTTACACTGGGTTCAAAATTCTGTTTTTGAGGGCGAGTTAAGTGAGGGGAAATTGGCTGAGTTGAAGTTCAAACTTTCTCAGATAATAGATCCTGAGGTTGATTCTGTGATAATTTACACTTTGTGGGGTAAGTGGAAGGGCAGGGAGGTTATAGGGTTAAATAAGAATCCAGTTGATAGTTTAATTTAGTTTTAGCTATGGGGTTGACCTTGGGTCAACCCTTTTTTATTTTTTTATAATATTCGTTATTACATTTCCGAGAATCGCGTGAAGAAGTTAGCACATTGATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTTAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGGTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTAAATTTTGATAGGTTTAAGTTTTATTTTATGGTGG # Right flank : TTAGCATTAATATAATTTTCCAGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1745-1183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000044.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1744 30 100.0 37 .............................. GATTTAGACAGCTTTCAACAAGATTATTTTCATTTGC 1677 30 100.0 36 .............................. CGGCTAATCGGGGATACATAGAAATACCAATACTCC 1611 30 100.0 36 .............................. TGGGAAATTTCGGTTAAAGCAAGATGGAATGGGCTG 1545 30 100.0 36 .............................. GATACGACAACATCTTCAAGGTTGCGAGCGAGCTTC 1479 30 96.7 37 T............................. AGTATTTCAATTCGTTCCTCCTTGCTTAAAGTAACAC 1412 30 100.0 38 .............................. TTCATTTTAGCCTCCATGATTTTTTTGTTTTTTTATTT 1344 30 100.0 37 .............................. ATAATAAAGAAATCTGACAGTATCCATAGCAAAACTC 1277 30 100.0 35 .............................. ATCTCTTCAACGCTCAATATTTTACCCTCTGGCGG 1212 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 37 GTTTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : CCTGATTATTATTCTGGGAAGCAACCTCCGGCGGATTGGCAGAATCCAAATCCTATAAAATTTTTGACTGTTGAGAAGACGCATTTTCAATTTTATTTGATTTCGCAGGATAGTTCTTTACTTCAGAAGTCGGAGGTGTTATTAAAGGAGGCGTTAGGGAAGTTTGGGATTGGGGCGAAGACATCTTTGGGGTATGGGATATTTGAGATTTAGGGGGAGATGCGTTAGGTGTTCAATTTTGTTTTGTGGGTTGAGGGGTTGTTTTATATTCGTTATTTCGTTTCCGAGAATCGCGTGAAGAAGTTAGCACATTGATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTCAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGCTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTGAATCTTGGTAGGTTTAAGTTTTATTTTATGGTG # Right flank : GAAATTCTTGCTGTAAAATTATTTCAAAAAACACAAAATTCATTGCCTAAAAACTTATTTCACAGCAACTGTAAATGTTTTGCGTTAAGTTAAAATCATAGGAGAGGGGTTAAAATGTTAAGGAATTTATTTTTAGTTTTAATTTTTAATTCTTTAATTTTTTGTGAAAAGTTATTTTCACAGCTATCGTTTACAGGTGTTTCTGATCCTTGGATCAAGGGGAGGGTTTATCTTTTTGATGGGCATCAAAATTATGGGAGAAGAAGTTGGGCTTTGGCAGGTGGCTTAGGTAATTTAAATGTTAAGAGGGATAGGTATAATTTATTAGATTTAAGGTCTTTCGGGTTAAAAGATTCAGTTAGGGGAATTGGTAAAAGAGTAAGGGTTGGGGGAAGCGTCGGCATCATGGGTTTATTTCCCATCTTGCTTTTTCGCTCTGATATAAAATTTGGAGGGGTTCCTGTAACAAATTTTCAAGTAGAAATTGGGTTTAAAATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 13175-10939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000044.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13174 30 100.0 38 .............................. TTCGATATTGTCAACTCTATCAGACAAATTTTTTATCA 13106 30 100.0 37 .............................. GCACCAATACCCATCCTTTCTCTTTCGGCGGCTTCAC 13039 30 100.0 37 .............................. TTTTGTAATTCCGTATAACTCATATCCTTTCTCTATT 12972 30 100.0 38 .............................. ATGTTTGAATTTATGCAATTTTATTTATGATTTGGAAA 12904 30 100.0 37 .............................. TTGAAAGGGGTTCTATAATTGCGATTAAATTGTAAAA 12837 30 100.0 37 .............................. ATGAGAACAAGCACTGGAAATTCCTTAACATAAATCT 12770 30 100.0 36 .............................. TCATTTTTTCCTCCATTGTTTTGTTTTTGAATTTAA 12704 30 100.0 36 .............................. AAGAGAGACAAAGAAGGGGACTGACGGGATCCCAGA 12638 30 100.0 38 .............................. AGCATAAACGAGCGCCTTGATCCACTCCTCGCCCCTGA 12570 30 100.0 36 .............................. AATATGAACAGCCAAAACAACATGCGGAGGTGAAGG 12504 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 12437 30 100.0 38 .............................. GGTGAAATACCGCCTGAAGCTTCACGACAACAGGCTCG 12369 30 100.0 36 .............................. TAAAATTCTCTTCGCTTCATTTTCGCTTATTTCTAC 12303 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 12235 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 12167 30 100.0 35 .............................. TGGGACAACAGGATCGGCGTCAAGCTGACGAATTC 12102 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 12035 30 100.0 37 .............................. ACTACAGCCTTGTGCCGGGAGACATTGTCGAAATCGA 11968 30 100.0 34 .............................. TAGATTTTCTTATATTTTACTGCTCCACCAATTA 11904 30 100.0 38 .............................. TAAATTCGCAATTATATGCAACACCATTGGAAATAAAT 11836 30 100.0 37 .............................. CAAATAAATAATCATTCTTCTTCACAACATTGTTAAA 11769 30 100.0 35 .............................. ACCCTCAAGAGCCAGTTCTTTTGTCATTTTAACCA 11704 30 100.0 36 .............................. TATATCTTGCCAAAGCGGTATCTATATTACTTTCAT 11638 30 100.0 37 .............................. AATATTCTACACTGCCACATTTTTCACACCTAACTTC 11571 30 100.0 35 .............................. TTCGTAGCTAACTCTTATCTTGATTCTGTTATTCA 11506 30 100.0 37 .............................. ACACATTATTCCGCCGACGCCGAACGCAAATGTTTGG 11439 30 100.0 37 .............................. CCCTTGATAGGGAAAAATTGGACTGCGTCATTTAATC 11372 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 11304 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 11236 30 100.0 36 .............................. GTTTTTAGAAAGGTTTTGGGTTAGCATTATTATGTC 11170 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 11103 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 11036 30 100.0 37 .............................. CTATGATATACAAAAACAACAACTTTACTCTCATTTT 10969 30 86.7 0 ........T..................TTA | A [10941] ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.4 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : TTCAAAATACTTTTTATCCTTTAA # Right flank : GGGTAATTTGTGAATTGAATTGGTGAGGGGGGGTTAAAGCATATAGTTTGTGGAAAGCTTTTAATGTTATGGTGAGTAAAAGGGTAAAAAGGTCAGAAAAATTTTTGATAATGTGCATGTAAAGTCAGTTTAAGAAATTTTGTAAGCCGGGTAATTTCAGAGAGTGTAGCTCTTGACTTTTATTTAATTTATTGATATAATTAGCACAGAGAGGAGCCTCCAAAATACTAAGGTGGATTTAAAATGGAATTAAAGTTAAAGTGCAAAACCATAACACCAATGTTTATGGCGGGGGCTGATGGTAAAACTCCTGAGTTAAGGTCTTCAGAGTTTAAGGGGATGATGAGGTGGTGGTGGAGGGCAATAAAGGCGGATGATGATATTGGAAAGTTGAGAAAAGAGGAAGCGGAAATTTTTGGAGGGACTGGGGAAGGAGAGGGCAAAAGCAAGGTGAGGGTGATAGTAAAGCCAGGCTCAATTGACATAGGCAATGATGTTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 2174-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000090.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2173 30 100.0 35 .............................. TTAAAAGATTTTTAAGAAAATCTCTTAATTTTTTC 2108 30 100.0 35 .............................. AGATTTTTTACTCCAATGCCAAAGGGAGCAACAAA 2043 30 100.0 36 .............................. ATGGGAAATTTATGGATTATTTAAGTTTTGATTTTT 1977 30 100.0 36 .............................. AATGAATTTTCAATTGTTTGTGTTAAAGTTTTATCA 1911 30 100.0 37 .............................. TAAATTAATTTTACAATATGCTCCGGTAAAAGCCTAT 1844 30 100.0 36 .............................. AAGCTATTCACCCCAATGGCGCCCGGTTTTACCTAA 1778 30 100.0 37 .............................. TTACAAACCGCAAATTTCGGCGATATCCTCCTCATTA 1711 30 100.0 36 .............................. TCCTGCTACGTAAAAATACTTTCTCATTTTGCCTCC 1645 30 100.0 36 .............................. ATATCAAGGATATCAACCCTCCGCCCATCCTTCTTT 1579 30 100.0 35 .............................. ACTGAAAATCTCGCTCGGAAAATTCTCACCGAAAA 1514 30 100.0 38 .............................. ATTAGCTTGAGGGAGTTGTTGCAATGAATTTCTTAAAT 1446 30 100.0 36 .............................. TCTTTAAAACTAACAAGCAAATTTTTACCATATTTT 1380 30 100.0 37 .............................. CTTTTGAAGTTGCTAAATTATTGGCGTGGAACGACGA 1313 30 100.0 35 .............................. TCTCTTGACAAATTGCGTTGAAGTTATTATATTTA 1248 30 100.0 36 .............................. CTACAAATATAACAAATTTTATCTTGCTTGTCAAGA 1182 30 100.0 36 .............................. AAAATTAAATCTCTGCTTACCAAAAATAAACCAAAT 1116 30 100.0 35 .............................. TTTGGTTAATCGGAAAGAGCAAGAAAGGAGAATTT 1051 30 100.0 37 .............................. TTCAGCAATCTCTTTCATCTCATCCGTCACTCTTTTA 984 30 100.0 35 .............................. CTGAATTTCAATCATCTGATCGGTTAATTGCCTTA 919 30 100.0 36 .............................. GGAGGCAAGCGATTATACTTTTAAAGCTGATGTAAT 853 30 100.0 36 .............................. TTTAAATCTTCCTGAAACTTTAGCGCCTGAACCTTG 787 30 100.0 36 .............................. TATAAATTAACCCCAATTTTCTCAAGTTCAAGCTTT 721 30 100.0 36 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCC 655 30 100.0 37 .............................. GAACCTTTTAAAAACAATAAGTCACCGAGACGATTAT 588 30 100.0 37 .............................. AATTCTTTTGGAACAAAATAAAAAAGTGTATTGTGCA 521 30 100.0 37 .............................. ACGCAATTTGTCAAGAGGCAAAAATAAAAGTGTGATT 454 30 100.0 36 .............................. TCCTGAAACTTTAGCGCCTGAACCTTCGCCTCATCT 388 30 100.0 37 .............................. AAGATTTGCTTGATGATTTAACTTATCAACTATTGGA 321 30 100.0 37 .............................. GAGATAGCGCCCCTGTGAATCTTTGAGTTTTCTTAAC 254 30 100.0 37 .............................. GAAAGTTGAGCGACAAGTTTTATAATTCTGGGTATAA 187 30 100.0 34 .............................. TAATATATCGTTCCACTTGCAATCCTTACGCCCG 123 30 100.0 38 .............................. TGAACTCTTCTTTCCCCATTTCATCAGCCCGTAGCTTC 55 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 100.0 36 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : TTATGGCTATGGGATAAAATATCTGCTT # Right flank : CATAAGAGCATACCATATATTCTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 25450-24030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVI01000010.1 Candidatus Kryptonium thompsoni strain JGI-8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25449 30 100.0 36 .............................. AATTAAGAGATAAGGAAATAGAGGGTGAATTAGTGC 25383 30 100.0 36 .............................. AGTGATAAATGTGAGTTTCTGCAGACTTTTTGGGAA 25317 30 100.0 38 .............................. GTATTTGTAATTTATTCCGATTGAATTTAGCGAGACAT 25249 30 100.0 36 .............................. AAATTTGCCCGAATGGATGATTTTGAAGGTTTTATT 25183 30 100.0 36 .............................. TTCGTTCAAACACAACTTCTTTTGGAGTTGGAACAA 25117 30 100.0 36 .............................. ACGAGTTCTCAAATAAACAAGATAGCGCAAGCACGG 25051 30 100.0 35 .............................. AGCGATTAACTAAAGTTAATCGGGAAAATTATTGA 24986 30 100.0 36 .............................. TTACAAAAGCATCAGCATAGTCAGGCGAACGCCCCA 24920 30 100.0 35 .............................. CGTTTTGAATTTCAGCGAGTTCGCTTGCACTTATA 24855 30 100.0 37 .............................. TGATTTGGCTCTATTTTCATCACCATTAAACTTTTCA 24788 30 100.0 37 .............................. GATGAATTGACTTGGGAACATGTAAAATATATTGCAG 24721 30 100.0 36 .............................. TTTCTTTGGGATTTCTTTATATATTGAAGCTTCATA 24655 30 100.0 36 .............................. AGTTAAATTTTTAAAGCCCTTGATTGGGTCAAAGAA 24589 30 100.0 36 .............................. CTTTATAAAAGCGAAAATATAAGTTATCAAATTGGC 24523 30 100.0 36 .............................. GACGATTATTATAAGTTGATTGATTTATTTGACAAT 24457 30 100.0 36 .............................. TTGCTACATCAAACATAATTTCAACGCAAGCGTCGT 24391 30 100.0 35 .............................. AGAAGGATTTCTGGTAGAAATTTTCTCGGTAAGAA 24326 30 100.0 37 .............................. AGCACGAAACTCAAATTGGTGCAACGGCTGAATTGGA 24259 30 100.0 38 .............................. GGTGCCTGTCCCTTTGCATAAGGGTTTGTCTTTAAAGT 24191 30 100.0 36 .............................. TCAGAACATATGTTTCATTATTTTCGGATTTCATTC 24125 30 100.0 36 .............................. AAATTTTCAGGATTGATAACTATAAAATTTGGAAGA 24059 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : AAATTCCTTGATTTTAAATTTTTTCATAGTTTTTTGTGAAATTGTTTTAAATATTTTCGTTTCTAATATATAAATTTTTTAGTTTTTTCCAAAAGATAAAACTTAAAAATTTAAAAGTCAAGAGGGTAGGGTGGTAATTTGGGGTGGGGAGGATAGTGACTATGAGAGGGTGAAAGGGTTGAGGGCGGGAAGTTGTGGGCGCTTGATTTATTATATTTGTTTTGATAAATTTTTATGGTGAGTTGAAGATGTTAAGAAATGAGCACACGGTTTTGAGGAGTTTTAGTTGATGTGAGGATAGCAGTGAAGTAGAATAATTTAGTCGCGGACAGGATTTTGGGGGATTAAGTTTAGCGGTTAAATATTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGGCTGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : ATGGCAAAAATTACACTGTTTTTGCCGTGTTGGTCAGCCGTTTTGTGGGATAATGGAAATTTTTATCAATCAAAGAAATATACAATTCATGTTGTAGACAGAGTTGGGAGTGGTGATGCTTTTTGTGGCGGGTTAATTTATAGCTTTTTAAAAAATGCCAATGCCAAAGATGCCTTAGAGTTTGCAGTAGCAGCTTCATGTTTAGTTCACTCAATACCGGGAGATTTTGGTTTATTGTCAATTCAAGAAATAGAAGCATTAGCTACTGGTCCCGGAACAGGTCGAATTGTTAGATAATTCTCGGGCTAACAGCTACTTAAGGCTTATAAGTTTTGCGGTTCTGTCAAGTTCAGTGAGCTTCTCTTTGTCTCAGTTCTTTTTGGAGTGGTGGACAGGTTACTTGCTTTTCGTTTAAAAAATTTGTTATATTTAACTTAGCTATGAGTCTTCTCTCATGGCTTCCTCCTTTTAGTTTAACTATCGCCGGGGGAGCAAAACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //