Array 1 937468-943200 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJO01000001.1 Erwinia amylovora strain CTBT3-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 937468 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 937529 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 937590 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 937651 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 937712 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 937773 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 937834 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 937895 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 937956 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 938017 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 938078 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 938139 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 938200 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 938261 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 938322 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 938383 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 938444 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 938505 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 938566 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 938627 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 938688 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 938749 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 938810 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 938871 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 938932 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 938993 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 939054 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 939115 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 939176 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 939237 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 939298 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 939359 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 939420 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 939481 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 939542 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 939603 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 939664 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 939725 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 939786 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 939847 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 939908 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 939969 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 940030 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 940091 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 940152 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 940213 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 940274 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 940335 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 940396 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 940457 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 940518 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 940579 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 940640 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 940701 29 100.0 32 ............................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 940762 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 940823 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 940884 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 940945 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 941006 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 941067 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 941128 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 941189 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 941250 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 941311 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 941372 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 941433 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 941494 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 941555 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 941616 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 941677 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 941738 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 941799 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 941860 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 941921 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 941982 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 942043 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 942104 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 942165 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 942226 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 942287 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 942348 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 942409 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 942470 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 942531 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 942592 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 942653 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 942745 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 942806 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 942867 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 942928 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 942989 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 943050 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 943111 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 943172 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 94 29 99.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 952240-953794 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJO01000001.1 Erwinia amylovora strain CTBT3-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 952240 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 952301 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 952362 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 952423 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 952484 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 952545 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 952606 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 952667 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 952728 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 952789 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 952850 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 952911 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 952973 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 953034 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 953095 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 953156 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 953217 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 953278 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 953339 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 953400 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 953461 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 953522 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 953583 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 953644 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 953705 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 953766 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 963258-963586 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJO01000001.1 Erwinia amylovora strain CTBT3-1 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 963258 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 963318 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 963378 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 963438 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 963498 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 963559 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //