Array 1 1040-2201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSM01000028.1 Lacticaseibacillus chiayiensis strain NCYUAS rawlib.basecaller_c28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1040 32 100.0 33 ................................ TTGTTGCCGAGTTGATCGACGTTTGGTAGTGAA 1105 32 100.0 34 ................................ TGCGCTATAGGCGCGGGGAATCTGAGCTGGGCAA 1171 32 100.0 34 ................................ TGGGTATTGGCTGGCGGATTAATCAAGGCAAGCC 1237 32 100.0 33 ................................ AGGTTGGTCAAGATATTCAAGCTTACGCCAGCG 1302 32 100.0 35 ................................ TCATTCCTGATAAGAACGGCAAAACCGAAGAGATC 1369 32 100.0 36 ................................ TTCCAATTTCCAAAGGTGCTTATGTACGGCGATCAG 1437 32 100.0 34 ................................ ATGGAAGAGGAAGTTAGCTCGGTTCCGAGTGTCT 1503 32 100.0 33 ................................ CAACCCGCTAAACGTCTTATCCATGAATGAAAG 1568 32 100.0 35 ................................ ATTTCGTCGCAAGACGAGTGACAGCAATCGATCAC 1635 32 100.0 34 ................................ ATCAATTGCACTGACCAAGGATGAATAGTCACCT 1701 32 100.0 36 ................................ CCAAGATTTGCAACGTGATGGTCATAAATGCGCATC 1769 32 100.0 35 ................................ AAGTGACGCCTCCGAATCATCTGGATCCAATTGCC 1836 32 100.0 35 ................................ ATCACAGCACGACTGGGAATTTGGTGTTCATTCCC 1903 32 100.0 35 ................................ TTGACGGCTTCGATGTGAGGCTGTAACTCTTTAAC 1970 32 100.0 36 ................................ CGCAAGTTGGGTTATCAGTCAATGCCAGTGGTGACT 2038 32 100.0 35 ................................ CTATTGTACACCGCGTTATGCAAGTCAATGTAAAA 2105 32 100.0 33 ................................ GGTTGCTACTTGGCCGGCACGCATGGTGGCTAC 2170 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.8 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : CATACGTAAGCACATTGTCTTTCCAGACTTGTTCAATATGAATAAGTGCCCACTGACGTTTGCAAAAAACGAAATGCTGAATGCCAGATATTAAAAGCCAATCCTCTTCTGAATAATACAATCGAGTCACCTCCAAAGCAGCTATTAAATTCACCTATGCTCATTATTTCACCTATTGGCTTTGATTGCCAGCAGAAGAAGCCGAAAACATAGCGCTTACAAGCCTGCAGCCAAAAGTTTTTTTAAATCTAGTTGATCATATCAGGCAGGCATTGAAGATAAGTTAACGTACTATGTTATATTATTAGTGAAGAACAACATGTTTCGGCAATGAAGATCTAAGTGCGAATGTAAGGCACACATGAAAACGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTCTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : TATACCCCTTGTGAAGGGGCATTAGGGCGTTGAAATCATTCCAATCAATAGAATACACAAAGCAAAATTGTTGCTTTAATACTGCACTTTCTCCGCAAATAAACCAGCATGGAACCCGACTGGAAGTCTGTCACATGCCGGCTTATTGTTTAGACTGTTTGCTGAATCTACCCGTAGTTCCTGTCGTTATAAAGTCAATAAAATGAACATCAAAATTAGAAAATCAAAACTGACAGCGGCCACCAGAATTGGTCTACAATTTATACCGTCAATTTTCTCGACATCTGGTGTTTTTTATATGGTCGCCTCCCGATTCTTATCCATCCGTAACGCTATGCGGCTTGCCCTCAATCTTAAGCACCTCCTTCACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCTGTAACTTCTGCAACCCATCAAACGAAAAACCAAGCCGCCGCATCCAGTTAGTCATGACAAAAAGATACGGATCCGCCATCGAAAACCGTTTACCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28668-30089 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSM01000011.1 Lacticaseibacillus chiayiensis strain NCYUAS rawlib.basecaller_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28668 36 100.0 30 .................................... CCATTTGGGAATATCTGGGCACAGGTAATT 28734 36 100.0 30 .................................... CGACAAGATTGACGTATCTAGCGCCCCTAG 28800 36 100.0 30 .................................... AGTGATCCTGCAAAGGGCGTAAGAATCATA 28866 36 100.0 30 .................................... CTGCTTGCAGGCCGGCATCACCGCGACACA 28932 36 100.0 30 .................................... TTTTGATCGTTAACTAAAACATACCAATCT 28998 36 100.0 30 .................................... TTTAGGCAACCGTTTCGATTTTCTCGCTAA 29064 36 100.0 30 .................................... TCGAGGATTAAAGCGCCGAGGTCATTGCCG 29130 36 100.0 30 .................................... GTATCAGTGCCATATCCGTCTTTAAACGCC 29196 36 100.0 30 .................................... ATCGCCATTCTGGGGCGAGGCTGCCGTGTT 29262 36 100.0 30 .................................... TACGCAAGTAAGCGTTTTGGGGTACTAATC 29328 36 100.0 30 .................................... CTGACAGTCTGGACTGAGATCTACGCTGGC 29394 36 100.0 30 .................................... CCATCATCAGGCGAAAAACGCGCTACATAT 29460 36 100.0 30 .................................... ATCTAAGATCTGACATTTCGACCGTTTTGG 29526 36 100.0 30 .................................... CGTCTTATACGGTTGTGACCCTTGTCAGGC 29592 36 100.0 30 .................................... ATTCATGTTAGTACGCCTCGCCGTCTTGTG 29658 36 100.0 30 .................................... ATCGACCCCATCTGGTTGTGCAATGTCATC 29724 36 100.0 30 .................................... TGATGGAGTCATCACCATACGATGTCATGA 29790 36 100.0 30 .................................... CCTTTTCGCATGCCGCTCATCGCCATCAAG 29856 36 100.0 30 .................................... ATGGGCGCTTGAAAATAAGATACCGATCAC 29922 36 100.0 30 .................................... AAGATCGGAAACGATTTTCCCAACTCTTTC 29988 36 100.0 30 .................................... AATTCAACCGCTGTGGCGGCCAAATATGCG 30054 36 91.7 0 ..............................G.A..T | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAACTAGATTTGGACAAGTTGTTACAACGTTGGATTTACAAAAAGATTGCACAAATGATTGACGATCAGCGGCTTGTTGAGTTAATTGACCAATCGCAACATATGGCCATGGAATTGCTGAAAGATCCTCTTTTGAACGACCTTCCTCTCACAGTTGAGCCCGGTGGGAAGCTGGAACAAATCATGAAGTATTGTAACCTCCATTTCGATGAAGGGGTAATTGTAGAACCAGTTTCTAAAATTGAAGCAGTGATTCAAACCTTAACAAAGCTTGAGGAAAAACGCCTTGTAATATTGGCTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAATGTTTGGTGGATCAAGTTAGTGGCACCACACTGGAGATACTTCTCATTGAATTTTCAGATGTCGAACGAAAGAGTTTCTTTGAAGACTGCCAGTATGTGTACATTGACAACGACTTTATGGATAGTCGAGAGCTGATTGATTAAGAGACCGTGTGAAAACACCG # Right flank : TTTTCAAATTGGTGTTAGTGGCCAAGCTTATTAGATAAAGAGCACTGATGAGGTTGGTCGTAAGAGTAATACGAATTTAACAAGATTGTATTTTGTCAAAGGCTGCTAATGAAATTTGCGGCTTTTGTTTGGCTAGACAAAAGAAATCTGCAAGTTGATTGTTAACCACTGTAATGCTAGGGCCTGTCTTAAAACTATTTCAACCATACCAGAATAGCCGAGATATAAACGGTTTCCAAGAAAACGGGGCCAATTTATTATATCGTGTTGCTAAGCGAATGCAATTCTTCACCTGATTGAAAAGGCTTTCAATCAGGTGGCGATCCCAGTAGACATGATAATCACAATCCCATTTTTCTTTTATGCTGGCTTTAGGTGTAATGGTATAGGAACCATGCTCGGTATCGATATAATCACGCAGATGCTTGGCATCATAAGCTTTATCGGCAATCACATTGACGCCAGCAAGTTCAAGTTGTACCAGCAATGGTTGCGCTGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8340-9661 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSM01000003.1 Lacticaseibacillus chiayiensis strain NCYUAS rawlib.basecaller_c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================================= ================== 8340 32 100.0 33 ................................ GTCAATATAGGTATATGCAAGCCCACTACCATC 8405 32 100.0 36 ................................ AGAAACAGGTGGATGCAGCACTGGCTGATGCAACAG 8473 32 100.0 35 ................................ ACCGCAAACGCAAACAACAGATTCGTGAACAGAAT 8540 32 100.0 34 ................................ TAAAGGCTTCACCAGATCACGAATCGAATAAAGC 8606 32 100.0 35 ................................ ACATGAAACAAATACGAGCACCGGCCAAAACGTAG 8673 32 100.0 34 ................................ ACAACATGAGGCAAAACCGATTCTGGCTCATTAC 8739 32 100.0 35 ................................ ATGGATGAGTTTAGGGATAGCGGATATGCCGTGGC 8806 32 100.0 34 ................................ ACGGTTCTTGGCCATGCCTAACATCGGGCCAAAG 8872 32 100.0 36 ................................ TATGGCAACTGTATTGAGCATGGCAAACTTTAAGGG 8940 32 100.0 36 ................................ ACGCTAACCTCACTCATATCCACATCAGACAGTTCC 9008 32 100.0 37 ................................ CAATCGCTGATGTCACGCATCAGGGCGAATATCTTCT 9077 32 100.0 36 ................................ TGTTGGCGCGGTCATTCCCAGCGAAATAAAAGCAAC 9145 32 100.0 35 ................................ TTGTTGCCGTCGTAAAGCTGCGGATTCTGGATCGT 9212 32 100.0 35 ................................ AATAACTCTGATTGGCAGAACAGTATCGGCAATAC 9279 32 96.9 34 ...........G.................... AGCCTTAAGATCAGCCCCATCTTGCTTGATCTCC 9345 32 90.6 34 ..T......T.........T............ TGCTTCCGCTGCTGCGTGACTAATCCCAAAAGCT 9411 32 93.8 33 ...........G..................G. ATAACCCGTGGTCTCTGCCATTTATAATTAAAA 9476 32 96.9 121 ...........G.................... CCCTTGTGCTCTTAAGGTTGGTGAAGCACAATTTTTTTAGTCCACACGGCGACATGAATTACAACTCGCGACAGTCTGAACCAAAGCAACGTTGCAGTTAGGCGTTTTGATAACTACCTGC 9629 32 71.9 0 A.........G.ACA.T..A....C.C..... | G [9657] ========== ====== ====== ====== ================================ ========================================================================================================================= ================== 19 32 97.4 40 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGGTTCGATGAGCGTTCGGGATTATGGATAGCCAGAGAGAGTCAATATGACGAAGAATTTGGATTGGATACCACTGACAAAGCTATGAACTATTTTGTGTAATTGACGATCTTAAGTTGGGATTTAGATAACTTGATTTGTTGTCGAAGTCTCAAGGACAGTGTAGTCTGAAGTGAGCGATACTCGGTTGAACTGAAAACTGCTTTCTGGTGACAAGATGATTCTTAGCATCACTCTTTGTAATACCTTCCCTTGGTGCGAATGTGGGGTAAACATAAAAACCCAGGGAGATTCGCACCATTTTTATATCTTAAAGTACCGTGTTGACGTTTTATCTAGGCTTTTTGATGTGTATAGTTCAGCACCAGCCGCAAGATATTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TAACAACAACAATACTCAATAACTGTGGCTTTAACAAAATGGCCTCTTTCCAATAACCGGGAAAAGGCCATTTTATTATATTGAACATTGAATTACATCTCGTCCATGATTAATATCTGTAAATCAACAATTCCACAGGAAAATACGCTGTTTATTCACGCACTTTGACAGTTTGATGATCTTGGAAATATGCTTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCGTCGTTTGCCTCAACGACTAAAGTACGATTATCCGCGGTAACACTAATATCAATGGAACACGCGCTTGGAGCTTCTTTCCAAGTCGCCACGGCAGCATCGATTATTGTGGGATCATATTGAACATGATAGTCACCCTTATAGGGGCGAACATCTAACACATGATGATTTAAAATAAAGCAGCGCCATTCGCGTACAAATTGGACAGGTTCACTTATCCAAATGGGG # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //