Array 1 208530-206488 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLTY01000005.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044951 CFSAN044951_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208529 29 100.0 32 ............................. GTGAAACACGGAATAACGCTTTCAGGCAGTGA 208468 29 100.0 32 ............................. ACACTATGTATCAATCGGGTCAACACAGTCAC 208407 29 100.0 32 ............................. GGTGGTAAGAATGACGGGTTCAATTCTGGTAG 208346 29 100.0 32 ............................. CGACCAGAACCCGCCTATAACGTCCCGGAACT 208285 29 100.0 32 ............................. TCAGCAAAAAATGCAATTCCAAGCATTAAGCC 208224 29 100.0 32 ............................. ACGGGGCTTTGATTGGCGGCGCACTTTCGGGG 208163 29 100.0 32 ............................. CCGTAGCGTTTTTCCAGATCATCGGTCAGAGT 208102 29 100.0 32 ............................. CGCCGGTACTCTGGTAACTGCGCCTGAAGTGC 208041 29 100.0 32 ............................. TCATTTTGCAACATCGGAAGAAACCGGACGTA 207980 29 100.0 32 ............................. GATGTATCAGGTAGCTCAGCGAACAAGTATAC 207919 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 207858 29 100.0 32 ............................. CTGCCTGCCGGAACGATCGTCAAGTACGGCGA 207797 29 100.0 32 ............................. TTATACGGACAGAACGACGCAATACCGGCTTT 207736 29 100.0 32 ............................. CGATGAAATATGCCGGTACGGGTATGGCCGGT 207675 29 100.0 32 ............................. GGTTCCGTATTCAGATTGAAGAGCTGGTTGAC 207614 29 100.0 32 ............................. GTGAAAAAGCAGCCTATCAGCGTGAAGTGCGG 207553 29 100.0 32 ............................. TGTAGTGAGTGATTGGGCGGGCGCGTATTCGA 207492 29 100.0 32 ............................. GTCCCGACGAATGGCAGCGTGAATTTCTGAGT 207431 29 100.0 32 ............................. CAATTCGGGAATCTGAGGGGCTAAGTCAGGCT 207370 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 207309 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAACCGCGT 207248 29 100.0 32 ............................. ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG 207187 29 100.0 32 ............................. GAGAAAACCAACGCATGAACAGTTTAACGGTA 207126 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 207065 29 100.0 32 ............................. ATGGTGGGATGCTGGACTGCGATGAAACCGCA 207004 29 100.0 32 ............................. CCAGTCTTGATACTGCTGTGTGTTCTTCCCGT 206943 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 206882 29 100.0 32 ............................. AGGAGACAAATTGACAGTCGTCTGGCGAAGAT 206821 29 100.0 32 ............................. ACGACAGTGACGCGTGATTGCTCGTAGTGGTC 206760 29 100.0 32 ............................. TGTGTAATTCGCTTTTTTGTAATTCAGAGGGG 206699 29 100.0 32 ............................. TGGGGCCGCGACTGGCAGCTTGTGCAGTTCGG 206638 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 206577 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 206516 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //