Array 1 421904-423213 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMS01000001.1 Escherichia coli strain 10432wE7 NODE_1_length_544977_cov_62.7175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421904 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 421965 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 422026 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 422087 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 422148 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 422209 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 422270 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 422331 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 422392 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 422453 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 422514 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 422575 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 422636 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 422697 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 422758 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 422819 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 422880 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 422941 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 423002 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 423063 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 423124 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 423185 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 448913-449977 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMS01000001.1 Escherichia coli strain 10432wE7 NODE_1_length_544977_cov_62.7175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448913 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 448974 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 449035 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 449096 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 449157 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 449218 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 449279 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 449340 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 449401 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 449462 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 449523 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 449584 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 449645 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 449705 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 449766 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 449827 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 449888 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 449949 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //