Array 1 653107-653802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040415.1 Dolosigranulum pigrum strain KPL3086 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 653107 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 653173 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 653239 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 653305 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 653371 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 653437 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 653503 36 100.0 30 .................................... GTTGACAACTAAATTTAGATCTGATATACT 653569 36 100.0 30 .................................... TTTCTTGTCAAGTACTTTTCTAAAATTTAT 653635 36 100.0 30 .................................... TACAACGCTGCTCTCCCATAAATTCGCACG 653701 36 100.0 30 .................................... TCGCCTAAATCTAAACCGTCAATATCTCCA 653767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTAGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGATGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAACAAAAAGTTACTGATACTTGTAAATACAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACTGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTTAAAGCTGAAGTTTTGCATGGACGAATGGCGCGATTACGAAATTTTGTGCAAATTTCTTTTTAAAAACCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CTTGTCCTAGCAGAATACTAGCTGATGTCTGTGAGCTAATTTAGCAGATGATCCCCTTGCTAGACTATGAACTGACTGCTCTTGACGTCGATACACGCGATTAAAAACTGAAAAATTGGATAAAAAAAGAAAAAAAGAAGGCGTTTAAAAAAAGGGGTGTTTTTTTATGATCAAGCTTTTTTTAGGAGTTTGACATAACCCAATAAAAAACAGGACTAAGACCAACTGAAAAGTTGGAAAGAAAAAAGACCCAACGCTAAAAGTGCGCTGAGCCTTGTGGTAAAAGCTTTTCTATTCATTTTCTGAGTTTGTCATATTTAGCATTAAGACAAACTGCCACTTTAAAAATTATAAGCTATCCAGCGACGCATAATACTAATAATGCACAATATCGACTACCAATTTTATTTTCTATACTTTATGAATATGGAATTTGCTACATAATTTAATTTTTATCTCTACAGTCCTTTTAGATATTTAAAAATTAAGGCTTGGCTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 655700-656329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040415.1 Dolosigranulum pigrum strain KPL3086 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 655700 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 655766 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 655832 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 655898 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 655964 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 656030 36 100.0 30 .................................... GCGTGATAGTAGCTTCTTGTCATACATTTT 656096 36 100.0 30 .................................... TATGTTCGATGCCATAGCGGAAGGACGAGG 656162 36 100.0 30 .................................... CCAGAAAATAAAAGAGCTGCGAACGGACAA 656228 36 100.0 30 .................................... AGTCAATTAATCGATATGGAATTATTCGAT 656294 36 91.7 0 ..............................T...TT | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ATCAACTTTATCAGGCTATAAAATATGCGAAAATAAATAAAAATAATATGAATGATATAAGTTTTGAACAGTTTTTATCATTGTTTAATAGCTATAAATTGTTTAATGGATAAATCTAAAGGACTGCCTGAAAGCAGTCCTTTAGATTTATTTGTTGCATATAATACTACTAATGTTCATCAATTTTCAGTATTGAGTTTTACTCAATTCTTATTGTGACAAACTCATTTTCCCTTAAGTTTTTTAAAGCGTTCTAAACTTTTCTTAAATTTTATTTGAGCTTCTTCTGACATTGTATCATCAGTTTTCACTGGATCAGATGCCCACTCAGGCAAGTTTTCAATTTTTCTCTTACGTTTTTTATATTTATATTTCTTCGCCAGTCATAAAATTAATCATTGGTACTGGATTCGGATCTTCGTATTCTTTAAACCGAATAACGAAGCGTTGAATTTTATTTCCTTTTTTTGCTTTGATTTTTTCAATCGAAAGTTCATCAA # Right flank : TGATTGGTCAGATAACTTATGAGATTTAAAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAGATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGATTATCAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATAGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTATTGGGGTGGGATGAGCGGTTAGTTGAAGTGCTTGAGTCGGGTGAACATCAATTGAAGTGGATTCAACTGCCAACAGCTGGCGTGGACAAGTTGCCACTTGATTTACTGGCGCAAGAAGGGGTGCGGTTGACTTCAGCAAGCGGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //