Array 1 254-760 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHY01000102.1 Megasphaera sp. NM10 Contig102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 254 32 100.0 37 ................................ TGATTGTAGTCCCGAACAATATCGAGGAACAAATCAA 323 32 100.0 36 ................................ CGACCTGGTGCAATACTGCTTGAAGGTCGTCGGGGC 391 32 100.0 36 ................................ ACATAAAACCATTTGAAAATATAAATTAAGGGCTGA 459 32 100.0 36 ................................ TATTTTAGGCATATTAATTGACGTTAAAGCCCCCCA 527 32 100.0 36 ................................ CAAAAAGAATATGAAAAATTGAATGAGTCCAAGGCC 595 32 90.6 36 ...........TG..A................ CTGGCAAAAGGATCGGCCATAGGGATTAAGGAAGCT 663 32 90.6 35 ...........AGT.................. TCGATGAATCGTCTATCCTGAAATCCTTTACCGGG 730 31 90.6 0 ..T...-....................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.5 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TCAGTTTTGCAGGAATTCTTGCTTCCATTTTCTTGACCATGTTTGGGTTCAGGCCGTTTTCAGAACAGATGACATTGAATTCCTTGTCGCCTTGAAGAATTGACAGAACAATCTTGGTCTTAAATTCAGAAGTGTACTTTTTTCTTGGCATGATAGCATCCTCCAATTTTCGTTACTTAATACTATATCATGCACTCTTAAAATTTTCAGTACTGGTCTGAATTCACAGGCCCATTATAGAATTCATTGTAGAG # Right flank : TATGATATAATTAAATTATAAGGTACTTATGGATGTGAATATTACAGAATACTGAAAGGAGGCGTTTTTCATGGAATATGCTGAAGATGATTTTTTGATGATATCGGGGATACAACATTTTTCTTTTTGTCCGAGACAATGGGCCTTAATTCACATAGACCAAGTTTGGGCTGAAAATGTTAAGACGATGGAAGGTAACATTATTCATGAAAATTGTCATAATCCAGACTTTGTGGAGAAACGCGGAGAGCTTCTTGTTTCCCGGGGGATGAGGATATCTTCAAGAACGTTGGGGGTAACTGGGCAATGTGATGTGGTGGAATTTCGTCAAAATAATGCTGGCTGTTATTTATACGGACAGAAAGGGGTATGGCAGCCTTTTCCCATTGAATACAAACGAGGGAAATCCAAGGATATAGATGCAGATCGTCTTCAGCTTTGCTGTCAAGCTATGTGTCTGACGGAAATGTTAGGAGTGCCTATTTCAGAAGGGGCTGTGT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6364-8217 **** Predicted by CRISPRDetect 2.4 *** >NZ_APHY01000031.1 Megasphaera sp. NM10 Contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6364 32 100.0 36 ................................ ATCAAGTACCTATACTCGCGACACGGTATGGAGATA 6432 32 100.0 39 ................................ CAGGCGCGCCGGCCTGTCCTACGGGCAGTACATGGCCCG 6503 32 100.0 35 ................................ GCCAACTGCGATACCGTATTCTGCCAATTCTGTGC 6570 32 100.0 37 ................................ GGTCCTGAGCTACATGAACGCCATGACGTCGAAGCAG 6639 32 100.0 36 ................................ GAGCTCTCCAGCTGCTGGAGCGGCATCAGCGTTGTC 6707 32 100.0 36 ................................ CCGGAAAAATCGGAGGACGACCTCTTTTCGGTCCAT 6775 32 100.0 36 ................................ TATCCTGGCCCATATGGGATGACCGAGGGCATCTTT 6843 32 100.0 35 ................................ AGATCAAGTGAGGTGCTAGGCATGGAAGAAAAAAC 6910 32 100.0 36 ................................ ATCAATGCCCGGCCTATAGCGGATGGTTATTTTCGT 6978 32 100.0 35 ................................ GACGAGTACGCTGAACGGTGTTGTCGCGCGTTTTG 7045 32 100.0 36 ................................ CGCATCAAATCCGCCTGCTGCCAGGCGGTCCATGCC 7113 32 100.0 34 ................................ GTTGATCGTGATGCAGCCGATAGGCGTCAGGGCC 7179 32 100.0 33 ................................ ATTCCTCCTAAGACCAACTGATAAGTATTTCTT 7244 32 100.0 36 ................................ GTTTCGTCATGCTATCACGCTCCTACCGTTTGGGCG 7312 32 100.0 36 ................................ AGGTTTCCCAGGACGTCGTTTGTAATCGGCGTTTTG 7380 32 100.0 36 ................................ CACCATGGAGAAATCCAACGGCCATAATGCAACAAT 7448 32 100.0 36 ................................ TGTGAGAAGTCTCTCGTCAAGTCCTTGTTTGAACAC 7516 32 100.0 34 ................................ ATCGTGTTGACCCAGCTCATGACGGTCGCCGTCA 7582 32 100.0 35 ................................ ACGGCCATAGGAGTCTGGAGTCACACCCTTATGAA 7649 32 100.0 35 ................................ TTCTTCCTTCTGAGCCAGGTAATCGATGTCGTCGT 7716 32 100.0 35 ................................ TACAATGAGTGCCACAAGCAGGGAATCAAACCTAT 7783 32 100.0 36 ................................ CCCATGTCATCAAAGGATTGACCTGGCGCGGCGGCT 7851 32 100.0 35 ................................ GGTCATTTTAAACTCCGTTGTGCCGTCAGCGTATC 7918 32 100.0 35 ................................ GACTGACGGAGCAAGCCATCCTTTATGTTTTGAAT 7985 32 100.0 36 ................................ TGCAAATATGTTTTCCATGCCGATTTCAATAGCCAT 8053 32 100.0 36 ................................ ATGAAGCATGAGCGCAATTTACAGTAAGTTGACGAA 8121 32 100.0 33 ................................ TCCACATGAAGAGCGGTGAACGGTGCGCGCCGA 8186 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAGATGGCTACGTATCGGCTAACCTGGCCCGGAAAGTGACCGGTTTCAGCGAAGATGATTTGCAGTATTTATGGAAGGCCATCATTAATATGTTTGAATATGACCATTCTGCTGCCAGAGGGAATATGGCCGTCCGCGAACTCATCGTTTTCAAGCATGATAGTGAACTGGGGAATGCTCCAGCTTATAAACTTTTTGACACTATTCATGTCCAGAAAAAAGATGGCGTCATTGCTCCCAGAAACTATACGGACTACGATATCACTGTAGATGAAAGTAAAATTCCGGAACATGTTACGTGTACCCGGATGATTTAACCAAGCAAAAAAAGCGGTGCGAAGCAGAATCACACATAAAATATATCAGAGCTTCGCACCCGTCTTGATTTCTATAAAAATGAGCAATATCCGGATAATTGACTCAAAAATTGAACTGCTCATCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCT # Right flank : AGAAATAAGGGGGGGTGGTATGGAATATAATGGGCCCCTTGTCAAGACCACGTTCTAAAATTTTAAGAGTGGCAGTAAGCAGAATTATTCTAAGCAGCGAAGCAAGCAAAGTAAAACTCGTTGGGAACCTTGTAGCCTAATGCCTCGTGGGCCGTATGTTGTTGTAATCATCTACGTATTGGTTAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //