Array 1 1136361-1136636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022794.1 Ralstonia solanacearum strain SL2330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1136361 29 100.0 32 ............................. GCGAGCGGCACTGATGTAGATCGACTCAGTTC 1136422 29 100.0 32 ............................. ATAACAACCCTGGGGGGACCGTCGCCACCACA 1136483 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 1136544 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 1136605 29 86.2 0 ............CA..........T...A | A,TC [1136628,1136630] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTCGACTGCGTGAGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGACGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCAAGACTGCTACGATCCCCAGTTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1146014-1149638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022794.1 Ralstonia solanacearum strain SL2330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1146014 29 100.0 32 ............................. CCTGCCCTGCACACGATCCACCACGATCCGCG 1146075 29 100.0 32 ............................. CGTTCATAGACCGTCACCACGTCCGCGGGCTG 1146136 29 96.6 32 ............................C GCTTGGGCATTGCCGACAACCTGCAACCGGAC 1146197 29 100.0 32 ............................. TCGATTCCGATGGGATTTGTCGACCTGGATGA 1146258 29 100.0 32 ............................. ATTGGGCATCAGCAGGTCGAGCCGGGGGCGGA 1146319 29 100.0 32 ............................. TCTACGAGCACCAGCAGGCTACGGCCGATTTT 1146380 29 100.0 32 ............................. CCGTTCTGCCCGGTGCTCACGATCGGCGCGGT 1146441 29 100.0 32 ............................. AGCGCGTCAAATCCGAGCCGGTGAAGGCCAGC 1146502 29 100.0 32 ............................. CGCCAAGCCCCCATGCCACCAGCAACGCCCTC 1146563 29 100.0 32 ............................. TAGCCATGTTCCCACTGCTGGGCATGCTCGCT 1146624 29 100.0 32 ............................. TCCGGCGTGTATCCGACCAGTACGCCGTCACT 1146685 29 100.0 32 ............................. CTACGGTTGAGTTGGGCCAGCGCGACGATCGG 1146746 29 100.0 32 ............................. GAATTGGGCGCACTGAGCAACGGCCTGCACGC 1146807 29 100.0 32 ............................. TTGATCGAGATGCTGCGTCTCGTCCAGGACCC 1146868 29 100.0 32 ............................. GACTACGCGGCCGCGCAGAGGCGCATCCGTGA 1146929 29 100.0 32 ............................. TTCGGTAGCCTTGGCTGCATCGATCTCACGCA 1146990 29 100.0 32 ............................. TAGACGAGGCCCAGCGCGCCCTGTCGGCGCTG 1147051 29 100.0 32 ............................. TACCTGCTCGACGGTTTTTTCGGAGCCATCAT 1147112 29 100.0 32 ............................. CGCTTGGCGCTGTTCGCCCGGCGGTCGTCTGG 1147173 29 100.0 32 ............................. AACCGCAGCGAGGTGATCCTTGCGCACACGCC 1147234 29 100.0 32 ............................. CTGCGGCGCCTGCATGCGGGGCAGTTTGAGGG 1147295 29 100.0 32 ............................. GCGATCATCTGGGCTGGGGTCTTCTTCCCGGC 1147356 29 100.0 32 ............................. CGCGTTCACTTCGCGCACGGCGGCAACCTGAC 1147417 29 96.6 33 ............................A GACGTGAGCGAGGGCGAGGACGTGACCTACCTG 1147479 29 100.0 32 ............................. AAGAGCCAGGCCGCTCCTGGCGCACCGAACTT 1147540 29 100.0 32 ............................. ATTGACCAGCAGGAAGAGGTCATCAAGCGCGC 1147601 29 100.0 32 ............................. TAGTTCAGGATGTCCCACTCGGACCGCTCATC 1147662 29 100.0 32 ............................. TAATCGGAGGCCGCAATGGGGCTCTTCGACTA 1147723 29 100.0 32 ............................. GGGCCCGTCATCTGCATCGTGATCGATGTGGC 1147784 29 100.0 32 ............................. TTCTGCGGCACCTCGACCATCGGCAGTTCTTC 1147845 29 100.0 32 ............................. GTGGTGTTCGGCGCCTTCACCAGCACGTTCGC 1147906 29 100.0 33 ............................. CAGTGCTGGCTCGTGCGATTCGAGTTCAATACC 1147968 29 100.0 32 ............................. CCATTGTCGGGCAAGCCCGACGTGAGCCATCC 1148029 29 100.0 32 ............................. TCGGCGCTCCAATCCCCGCGATCCATGCCGTC 1148090 29 100.0 32 ............................. CCAGGCGGTGCAGCTGACGGGATCGGTGGTGC 1148151 29 100.0 32 ............................. CGGCCATCGAGAACGCGCTGGCGATGCTGGCA 1148212 29 100.0 32 ............................. CGGCTTTATATGCCGGCCGGCAGCTGCTACAT 1148273 29 96.6 32 ............................A TCGCAGATCATCGAGGACGGCCCGCTCCACAA 1148334 29 100.0 31 ............................. GGGATGGTGAGGACCTTGCCCCCCGGCGCCA 1148394 29 100.0 28 ............................. GTGGCCAGCATGTCGCTCGCCAGCGCGC 1148451 29 100.0 32 ............................. TCCTCTGAGTATCTCGGGCTGCTCAATCAGAC 1148512 29 100.0 32 ............................. TTGATGCGGGTCAGGAAATCGCTCGACTCCTG 1148573 29 100.0 32 ............................. TCCATCACCATGGCCTGCTGGTCGAGCAGCTT 1148634 29 100.0 32 ............................. CGTGCAGCGCGCCAGGCGCGGTAGATAGCATC 1148695 29 100.0 32 ............................. CCGCCCGTGGCCTGCCAGCACGTCGCCATCGG 1148756 29 100.0 32 ............................. CTGCCGGCATCGCAGGCAGCTTTATGCAGGAA 1148817 29 100.0 32 ............................. ACTCGGAGATCGAACGATTCATCGAGGCATCC 1148878 29 100.0 32 ............................. TCGCGGCGGTCGGCGCAGTTGTCGTGATTGTG 1148939 29 100.0 32 ............................. TACGGTGATGTTGCGGCAACGAAGGTCGCGGA 1149000 29 100.0 32 ............................. GGAGTAGTCATGGATGAATACGATGTGGACCT 1149061 29 100.0 32 ............................. TCGCGGCGGTCGGCGCAGTTGTCGTGATTGTG 1149122 29 100.0 32 ............................. TCGGCAACCTTTAGCGCCATCAAATCGTCCAG 1149183 29 100.0 32 ............................. ATGAGCTACCTGGACGCGATGAAGACAGCGCT 1149244 29 100.0 32 ............................. ACGCGCCGTGCGTCAAGCAAACGGGTATCGAT 1149305 29 100.0 32 ............................. CACGGGACCGGCGCGCTGAACATGACCCGCCA 1149366 29 100.0 32 ............................. GCAAGAAGGTTAAAACTGGAATTGTCATTCCG 1149427 29 100.0 32 ............................. AAACCGGAGGAAGGCAAGGGCATGGACGCCAA 1149488 29 100.0 32 ............................. GAAGGCGATACCCTGCTGCTGAACCTGCCGGA 1149549 29 100.0 32 ............................. CCGCGCGAGGTCTGGGCGGCCGAGTTCCGCGA 1149610 29 89.7 0 ........T.........A..G....... | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGTACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GGGTTAGTCGCTGAAGCTTGTCCAGATGGTCGTGTACTTCCCGCGCATTGCGGGGATACCCCGCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGCAGCCACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTGGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //