Array 1 25314-25941 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFK01000035.1 Salinivibrio sp. PR5 scaffold35.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25314 28 96.4 32 ................T........... ACGCCCCTTTTCCGTAAACCTTTTTGCCTAAT 25374 28 96.4 32 ................T........... AAATGTTTAAAGAGTCGATAGAGGGTGATTTA 25434 28 100.0 32 ............................ ATACTTATTAACCCCGCTACAAATTTTTTGGT 25494 28 96.4 32 .............T.............. TTCAGCTTGTTGTATTCTGAATCTTGCGGATT 25554 28 100.0 32 ............................ TGATCATGGACCTGCGCGACAAGGATTCGGTC 25614 28 100.0 32 ............................ AGATGTTCACGACGTGGATGCGCTGCGCCGTG 25674 28 100.0 32 ............................ TGGTGACGTGATTGAAGTGATGGACAACTTCT 25734 28 96.4 32 .............T.............. ATACTTATTAACCCCGCTACAAATTTTTTGGT 25794 28 96.4 32 .............T.............. AGGATTGTACAGCGTCACGCTGTACAAAGATG 25854 28 100.0 32 ............................ TTTCAAGCACAGGCTCAGCACTGGGTTGCTTT 25914 28 92.9 0 .............T...T.......... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTTTATCTACGATTAGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTGCGGCCCACAGACGCTGAACGAAGCGCTTTATGCTTGGTTTTACGCCCGTTTGTACGTTCTCGCCATACTTTAAAGCTGCGCGGCTTTAACTCACGGCGCATCAGTGCAATGACATCATCTTGTCGCAGACCATATAGTGTTTCAATCGCCTCAAAAGGAGTTCGATCTTCCCACGCCATTTCAATAATCCGGTCTAAGTCACCAGGCTCGGTCAGTTGCATACGCTCCTCCTCGTAGTAGAGCGATAGATACGGATAAGTCGAGCCACGTGGATCAATAAGGGGAGATGCCTAAATCCGTTATGACCCTTATTTTTTGGCCATTTAAAAATAAACAATAAATACAGCTAGTTACGAAAGGCCCTTTTTAACAAGGGTAAAAGTCCATTTTTAACCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : AGGATTGAATGAGAACTCTTGTGTGCTGCTATATACCTAACGTCGTTCGGCTGAATCAATATGAGTGAAAAAGTTGGGAGTCACTTAAAAAAGCGCTATATTCATTATTCATATTTATGAATAAGTGCGATAGTTATGGCAACAACAAGTTTAAGTTTAGGGGAGCACTGGGAAGTGTTTATTAAAAACGAGGTAGCAAGTGGCCGTTACGGCTCTGCTAGCGAGGTTGTTCGTGATGCATTACGCACGCTTGAGGAACGCAAAACCAAACTGGATGTGTTGCGCGCACATCTTGATGAGGGGGCTCGACAGGCAGCAAGTGACACGTTTGTCGATGATTTTTCAATGGATGAACTGATTAACGACTTGGACGCAGAATCTTGACGGCGAGCCAAACAAAAAAGCAGGTTCGTATTACGCCCAGAGCACGTGATGATCTTAAAAATATTGGTCGTTACACTGAGCGTAAATGGGGAAAAGCACAGCGTAACACTTATTTA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35356-36344 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFK01000035.1 Salinivibrio sp. PR5 scaffold35.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35356 28 100.0 32 ............................ TGTTCATCCTGAAAGGGTCTGCGACGCGGCAA 35416 28 100.0 32 ............................ ACTCCTAAAGATACCAGCCACCACGGTTAACA 35476 28 100.0 32 ............................ TCTATATCGTCTTTTGTAAGCTCAAAGTGCAT 35536 28 100.0 32 ............................ GCGATTTGAGCGAAGTAAAGAACGACACGGCA 35596 28 100.0 32 ............................ AATGAGCACGTCTACCCGCGTTTACGATTACT 35656 28 100.0 32 ............................ GGTTGCAAGTCCTTTAGGGTGATGGTTGTCAC 35716 28 100.0 32 ............................ TGACAGAACTTGTCAAAATCGGCGGGCTTGGT 35776 28 100.0 32 ............................ GCCATAATCACCTATAAACAAAGAGATACACC 35836 28 100.0 32 ............................ GCTTTTTTTATCTGCCAATCGTGCAGCTCAGG 35896 28 100.0 32 ............................ GTCAGTCCTCACGTGTGAGATCGGTAACGACG 35956 28 100.0 32 ............................ CCTGTGCCTCTACCACCTTACGCATTTTGGTA 36016 28 100.0 32 ............................ AATATTGCGTGTCCGGTTTTCGGCCTTGGTGC 36076 28 100.0 33 ............................ TAGTCAGAGCGGTGTGCAGGTTGAAAAGCTAAA 36137 28 100.0 32 ............................ TTCTGAGTTCCACATAGACAGCAAGCTATTCG 36197 28 96.4 32 ..........G................. GCGCCGTTGCGTTGGTCAACGCCGCACTTTTC 36257 28 96.4 32 ..........G................. TCCCGCGTGCCCTGTGGTTTCGTCATTTTTTG 36317 28 96.4 0 ..........G................. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTGGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACAAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATGGTTGCAATAGGTGAGTTTTAACAGGGTAAAAAGATGATTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTATT # Right flank : ATGATAAATTCAGGCCGCGGATCGTTCACTATCGCATTGGTAGCGGAACGAGCATTATGAATGGTTCGTTCATTAGTGAGGGTGTCTTGTTTTTCTACAAAATGACCAACTAACTATACTCTTTCGTGGCTTGGTATGTAACTCGACGTCTATCGTTAGATTTATTTCTATTAAATAATCAAAAACTTACTATTCGCATGGTTATCATTGCCTAGATTTTTTAACCTAAGCCGAGATTCTCTTCTATGCTAACTCAGTAAAGAGGTTTTTACGGATGTTGAGTGCTAGGAGTTGGGTATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGTGCAGGAATTGTCGTTAGTTTTGTCACGATCATCCAACTAAATGGGCTGATGAATAAAGTTGATGAAATGGCACAAGTTCGGTATGCCTCGTATCAAACTGCCGATGAATTAAGGCAAAGCTCTGACGATTTAACCCGTCTGGGGCGAACGTATGTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //