Array 1 27977-28176 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS999574.1 Actinomyces urogenitalis DSM 15434 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 27977 23 91.3 33 ....A....G............. GTTCGCTTCACCGCCGGGCGAGGTCTAGGGCCC TG [27983] 28035 23 100.0 39 ....................... CCCGCCTGTAGCCCGTCAGTCATGAGGGCACGCTGCCCC 28097 23 100.0 34 ....................... CCGCCGCGCAGATGTCACCTATCGCGTTTCGTAG 28154 23 91.3 0 ...G..............G.... | ========== ====== ====== ====== ======================= ======================================= ================== 4 23 95.7 36 CGCCCCCCGAGCGAGGGAAGTCA # Left flank : CTGGCCCGCACACGCACGGTCGGACAACACCAAGGGGTAGCGAACACGGACGCCAGATAACGAAAGACAGCAGGAAGAGGCGGAGAACGCCAAGCGAGGCAGCTGCGAACACGCGGGACGGTAACAAACAACGCGACCATGGGCACCGACCATCGTCCTCTCGCGAACCCCGCTACCCCATCACCACCTTCACTACCCCTTGGCGTCCTTCGCACCCCCGTAGCGCGCGCTACGGGATAGCGGACAACACCAAGGGGTAGCGACCGCCAGAACGAGGTAGCGACGGTGAGAACGGGGTGGTGGCAACCAGCATGGGATAGCGCCGAACACTCGCGAACGAGCGCCCCAGCGAGCGCGCACCGCTGCCGGGGCCCCACCAAGGTGCGTCCGCCCAGATTCCGATGAACGGATACGGCATCTGTCCCCGCGAGCGTGCACCGCTGCCGGGCAAAGAATGCCAGCCCCCGGGCACACACCCAGCGGCATCGCACGCAAACGTG # Right flank : AGTCCCGGGCGTCGCGCTGCGCGGCGTAGGCGCGGGCGTGGCGCACGAGCTCGCGCGCCAGACCACGCCCGTAGGCCTGCGCCACCGAGTCCGCCTCCTCAGCAGTGGCACGCGCCTGCTTGCCCGCAGCCACCGCCTCAGCAGGAAGCTCACGGCCGGAGGGCACGGCGGAGTCCGTGACGGCGGGCGGCTCAACGCCCATCTCCTGCGCCACCTCACGCTCAGTCCACGAACCCAGACGGGCAGGGCTGGCCTCGGGGTGGTGCTGGAAGGCGAGCATCCGCCCCACACGCCAGGTGTGGATCGGGCAGCGCTGGGAGGAGGCCAGGAGCGTGGCCCCCTCCGGCAGGCTCACGACGGCGTCGTCGTGCGAGACGACGGCAGGCAGGCGGGTGCCGTCCTGGGTCGAGATCCCGGCACGCACCGCAGCGCGCACGGCCTCGTCGATCACGGGCCCCAGGACCCGATCGACCAAGGCAGCCTCAGTCAGCTCCAGCTCG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCCCCCGAGCGAGGGAAGTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1065560-1059673 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS999574.1 Actinomyces urogenitalis DSM 15434 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1065559 28 100.0 33 ............................ CGCCTTCAGCGTGTACTACTACGCCGCCTTCGC 1065498 28 100.0 34 ............................ GTCGGGTAGGCCTGGGTCGCGCGCACCCTTCGAG 1065436 28 100.0 33 ............................ GGATGCTGCGGGCATTTCTGAGATGACCGATGA 1065375 28 100.0 33 ............................ GCCCCGGGTGGCGGGGTTGAACGGGTTGGTGAC 1065314 28 100.0 33 ............................ GCGGAATCGGCCATGAGCGCGTTGATCACGGCG 1065253 28 100.0 34 ............................ GGGCGGGTGCTGTGCTCATGAGGAAACCATGACA 1065191 28 100.0 34 ............................ GTGAGCGTGGACGTGCCACCCATGGTCGCCGTGC 1065129 28 100.0 33 ............................ GCGACACAGCGCGCAATGGGCCGGACCCTGCGG 1065068 28 100.0 33 ............................ CAGCGATTCTGTCTATCCGTATCCTCTCCGACG 1065007 28 100.0 33 ............................ GAAGGCGGCGAAGTTGGTGGCGAGGTCGCGGCC 1064946 28 100.0 33 ............................ CAACGCCCGCTTCATCCTTTAGATGATTCGACC 1064885 28 100.0 33 ............................ CGCCTGCGTGTCGAAGGAGACGACGGCGGTGAT 1064824 28 100.0 33 ............................ GCCCGCACACGTTATTAGGGAGGAGTTGGCGTG 1064763 28 100.0 33 ............................ GGCCTGCCAGGCTGCGACGAACGTGCCCACGAC 1064702 28 100.0 33 ............................ CAACCTCCTCAGTGCCGACGGTGACCTCGCGCA 1064641 28 100.0 33 ............................ CGGCATCCGCTCCGCCGTCACGTCCGGGGTCTC 1064580 28 100.0 33 ............................ CGCGCCATGGACGACAACGCCCAGGCCCTCGAC 1064519 28 100.0 33 ............................ CGCGGTCATGGCGTCCTCGATGGGGCGCAGGTA 1064458 28 100.0 33 ............................ TGCGCGGATGAACTCGCCGCGTGGCATGACGGT 1064397 28 100.0 33 ............................ GTACTTGATGGGGTAGACCCGAGGGATTGGCGG 1064336 28 100.0 33 ............................ GGCGAGGGCACCCTTGTTGTTGGGGCGGAAGAT 1064275 28 100.0 33 ............................ GGCAGCGCAGAAGCTCGATATACCGCGTACGAC 1064214 28 100.0 33 ............................ CTCGAAGGCGCTTTTGTTGCTAAGCACCTTTAT 1064153 28 100.0 33 ............................ GGACCGCACGCCCTCACTCGACTCCCACGACGA 1064092 28 100.0 33 ............................ CGTGGGGTTGGCGGGGTTGCGTGTGGTGGCGTA 1064031 28 100.0 33 ............................ CAAGGACACCTTCAAGGTCCTGGCAGCCCTGAC 1063970 28 96.4 33 ....................A....... TGGCCTCAATGACCAGGCTTTTCAGACTAAGGG 1063909 28 100.0 33 ............................ CGCGCCCTCTAATTTGTCGTAGGTGAGTGTTTC 1063848 28 100.0 33 ............................ GGCATGGGCGAGGCTTAACTCGCGTAACTCTTG 1063787 28 100.0 34 ............................ CGGACAGTTCTTCAAGGCCCGTATCCCCGACGTC 1063725 28 100.0 33 ............................ CCTCCTCGCTATCCGCGATAACGTCGCGTATTT 1063664 28 100.0 33 ............................ CGTCACCACCCCCATCCGCACCTTCGGCGGATA 1063603 28 100.0 33 ............................ CGCCAGATCGCGGCGCACGTCGGCCAGGCCCTC 1063542 28 100.0 33 ............................ CCACTTCACGCCCATCACCGCATAACGGGCCAT 1063481 28 100.0 33 ............................ GGCGCTTCAGACATCGGTCTTGAGATGACGATG 1063420 28 100.0 33 ............................ GAACAGCAGCACATGGACATGAGGGTGCCAGCC 1063359 28 100.0 33 ............................ CCCGGACCAGTGAGCCGGTCTATCCGTACCGTG 1063298 28 100.0 34 ............................ CTGTCCGGGATCGGGGAGAAGATCGGGCCCCTGA 1063236 28 100.0 33 ............................ GGTGGCGGACGGGGAGGACAGGATGCCGGCGGG 1063175 28 100.0 33 ............................ TCAAGGTCTCTTGCTGCCACGGAAGCAGCGGGA 1063114 28 100.0 33 ............................ CTGCGTCTTGTTGCCCCCACCTATGAGGAGATC 1063053 28 100.0 34 ............................ CGAGGATGCCGCCGCTGTCTGTCCCGCCTGACGA 1062991 28 100.0 34 ............................ CGAGGATGCCGCCGCTGTCTGTCCCGCCTGACGA 1062929 28 100.0 33 ............................ CGACGACTACGACCGCCCCCTGTCGGGCACACA 1062868 28 100.0 33 ............................ CGAGTACGGAGGCATCACCGGGGGCCGCCCGGG 1062807 28 100.0 33 ............................ GTTCGCATGGCCCACGGACTGGTGCTACGGCAC 1062746 28 100.0 34 ............................ TGCGTATCGACTGGCCAACTTTCCGCAAGCCTGC 1062684 28 100.0 33 ............................ GGTCACCGGCACGACGCTGCCGGTCGCCCCCTA 1062623 28 100.0 33 ............................ GGGAAGAAGAGTCGTCGCATATCCGGCGTTCCT 1062562 28 100.0 33 ............................ GGTGTCAAAGGTGCCAGCACTGTAGGGAAGTGG 1062501 28 100.0 33 ............................ GCGCTGTGAACTTGAAGTCTGTCGAGGAGTCGG 1062440 28 100.0 33 ............................ CTGGCAGCCAGCGGCGCGGGCCTGACGGATCGT 1062379 28 100.0 33 ............................ CTCGCCGGGGTAGTTGGGGTGCTGGGTGGCGAC 1062318 28 100.0 33 ............................ CGCCGGGCCGTCACGCCTGTCGGTGCGGCTTAT 1062257 28 100.0 34 ............................ CAGGAGAACTCCCGCAACCTACGGGTCCTGCGCA 1062195 28 100.0 33 ............................ ATGCACATCACGCAGCACCGCACGCGAGCGAGC 1062134 28 100.0 33 ............................ GTTGGGTTCGAGACCGATCCGCGTGATTGGAGA 1062073 28 100.0 33 ............................ CGGAAGCGCGTGCCCGCCTCGTTGAGTTCAAGC 1062012 28 100.0 33 ............................ CTGGAGCGCGGACTAGGCGACCAAAGTGCTCAT 1061951 28 100.0 33 ............................ CACGGTCCCTGCCAGGTCCAGGGCGGCGGCGGT 1061890 28 100.0 33 ............................ CCGCGCCCCCCAACATCGTGGGAGGCGCGCAGA 1061829 28 100.0 33 ............................ CTGTCCGGGATCGGGGAGAAGATCGGGCCCCTG 1061768 28 100.0 33 ............................ GGATCAGCGTACTCATCTGCGTAGACCGGTGAA 1061707 28 100.0 33 ............................ CGCGGTGCTGTTTCTGCCCCTCCCGCGTCTTGG 1061646 28 100.0 33 ............................ CGTCTTGCCTGACCCCTGAAAACCTTTATAAAC 1061585 28 100.0 33 ............................ CAACTTCCGCGGTCGGGTCTAGATGGTGACCAC 1061524 28 100.0 34 ............................ GCCAACCCCGGCGCACCTCTGCCACGGTGCCGCG 1061462 28 100.0 33 ............................ TCAGCGCCAGTATCCTGGCCCCGTCCGGCGCCG 1061401 28 100.0 33 ............................ CACGATCCGCGCGGTCTCTGAAACTGGCCGCAA 1061340 28 100.0 33 ............................ GGCCTTTCGGCCATTTTTTGTGTGGTACCGGGG 1061279 28 100.0 33 ............................ CGGATGATCCCGCTGATTCCGTGCCGGGCTTTG 1061218 28 100.0 33 ............................ GGTCCCGAGGGCGTGAAGTCGAAGTGGCGACTT 1061157 28 100.0 33 ............................ GGCCAGCCCCCGGCGGTAGACCTCGGATCAGCA 1061096 28 100.0 33 ............................ GGGTATTAGCCTCGACTTCCTGGCCGCCATTAG 1061035 28 100.0 33 ............................ GCAGGCTCTTCCAGTCCAGACCCCCGGCCTTGG 1060974 28 100.0 33 ............................ CCGATTCTTGCGCTGCTGGCTAATGGCGGCCAG 1060913 28 100.0 33 ............................ CCGGACGAAGGTCCATCCCCGAGGCAGTGACAG 1060852 28 100.0 33 ............................ TGCCGACCATCGACATAATTCTTGCCGTACTTA 1060791 28 100.0 33 ............................ CCGGGCTTTCCGTAAGCCGTCCACTGAATACCA 1060730 28 100.0 33 ............................ CAGGAAAAGAACTGGCCCCTAGGAAGTGGTGAG 1060669 28 100.0 33 ............................ CGCACCCTTGGCCACTACGTCCCCGTAGCAGTC 1060608 28 100.0 33 ............................ CTCGAAGGCGCTTTTGTTGCTAAGCACCTTTAT 1060547 28 100.0 33 ............................ CCAAAATGCTCACCCTTGACACGGTGGTCCGAG 1060486 28 100.0 34 ............................ GTGCTCCGCCCCCTGACTGAGCACAGGAAAGGTG 1060424 28 100.0 33 ............................ GTCCTCAGGCAGGTCGTAGGCCTCGACAATCTC 1060363 28 100.0 33 ............................ CCGGGCCTGCTCCATCGTGTAAGCCCACGGCAC 1060302 28 100.0 33 ............................ GGCGCGGGTGGTGCCGCCGTCGTCAGCCCACAG 1060241 28 100.0 33 ............................ CGCGGCGGTCGTGCTGGCGATATCCACGTCATC 1060180 28 100.0 33 ............................ CAGCATGCACCACCAGATCCGGTTGCTGGGTCC 1060119 28 100.0 24 ............................ CACCACCCCCGCCACGACCCCGGA Deletion [1060068] 1060067 28 100.0 33 ............................ CGTCCTGGCATGTATCCAGGCGATGAAACTCGA 1060006 28 100.0 33 ............................ GTTTCCGCACGGCCTCAGTCCGGGAGTTGCCCC 1059945 28 100.0 33 ............................ GGCGGGCTGGTACCAGGTCGAGGCCACCTGCGC 1059884 28 100.0 34 ............................ GCGCCCTTGCCTCGGGCGGTCCAGTAGCGGCCAG 1059822 28 100.0 33 ............................ CCAGAGCCGAGGCCTCTAGATCCTCGCCCTGGA 1059761 28 100.0 33 ............................ CGGCAAGCGCCGCCGCCGGTGGGTGACCGCAAA 1059700 28 85.7 0 ...................A....C.AA | ========== ====== ====== ====== ============================ ================================== ================== 97 28 99.8 33 GTCGACCCCGCGTGAGCGGGGATGAGCC # Left flank : AACGGCAGTCCGTCGCAGGTGGAGCCAATTATGCGATCGGGATGGATGCATCGTGGTCGTCCTGATTCTCTCGGCCGCTCCAGCCTCCCTTCGCGGCGCCGTGACCAGATGGCTCCTGGAGGTCTCTCCAGGAGTATTCGTCGGGCGGTTGTCCGCGCGAGTGCGCGAGCACCTGTGGGAGATGGTCCAGACCTACATCGGGGACGGACGCGCTCTCCTGATCTGGTCGGTCCGTTCAGAACAGCGTTTCGCCGTAGCCTCGTTGGGGCATGAGCGTGAACCTATCGATATCGAGGGGTGCACGGTGATGCGTTCGTCCTATCGTGCCGCTGAGGGCTGGACAGCCATACCCGGAGCAGTCAAGCCGGCCAAGGAGTCCTGGTCGATCGCAGCACGACGACGGCGTTTTCGGAACTCCGCAGAACGCTCTCTAGGTCAGCAGTAAAGGAATACGGCCCACACGCTCACTGGCTTGCTTGAAGTTCCAGCGTTTTCCAAGG # Right flank : GGAGCAAATGGGCGCCTGCGCCGAGAAACGCGACCTTCTCCCCCGACGTCTCGGGGATATTGCGTTGATCCCAACTGAGCCGCTCAGAGCAGACGGTGGCCGCGCAGCAATGCGCTGCGCGGCCACCGATCTCAGCCCCGTCGGAACACAGGCACCGTGAAGAAGTCGACCGCCGTGGTCACCATCTGCCCGCCGTGGAGCCTCTCACCGGTCCAGAAGTCCTCCCAATCACCCTGAGGAAGGTAGGTCTGCCACTCCTTGGCACCCGGCTGCGTGACAGGATGAACAAGCAGCTTGCTGCCGAGTTTGTACTGCAACGGGTGGTTCCAGATCTCCGGATCGTCCGCGTGGTCGAAGAACAGCGCCCGCATCAGCGGCGCTCCCCCAGCAACACAGTCCTGTGCCTCGCTGGCCAAATACGGCCGCAGCTGCTGACGGAGTGCCACAAACCGACGCGCTACCTCCACCACCTGTGGCTCACCTGCAGCCTCCGCCACGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGTGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGACCCCGCGTGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //