Array 1 953839-954842 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQZ01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTC5742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 953839 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 953900 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 953961 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 954022 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 954083 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 954144 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 954205 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 954266 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 954327 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 954388 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 954449 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 954510 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 954571 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 954632 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 954693 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 954754 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 954815 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCACATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 971112-974436 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQZ01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTC5742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 971112 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 971173 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 971234 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 971295 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 971356 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 971417 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 971478 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 971539 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 971600 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 971661 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 971722 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 971783 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 971844 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 971905 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 971966 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 972027 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 972088 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 972149 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 972210 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 972271 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 972332 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 972393 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 972454 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 972515 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 972576 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 972637 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 972698 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 972759 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 972820 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 972881 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 972942 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 973003 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 973064 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 973125 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 973186 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 973247 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 973308 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 973369 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 973430 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 973491 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 973552 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 973613 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 973675 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 973736 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 973797 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 973858 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 973919 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 973980 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 974041 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 974102 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 974163 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 974224 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 974285 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 974346 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 974407 29 93.1 0 A...........T................ | A [974433] ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //