Array 1 2659129-2658490 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ268976.1 Escherichia coli strain 53-1034 aervV-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2659128 29 100.0 32 ............................. GATCCGGCGTCATGGGGTCGCCCCACAATACA 2659067 29 96.6 32 ............................T GCTCCCACTCTATCGTTACGTGCTCACCGCAG 2659006 29 100.0 33 ............................. TTTGCCTGGGCCGGTTCACCAAAAACCGCGCGC 2658944 29 100.0 32 ............................. GCAACCGTCACAGCCTGCCCTGGCTTTACATA 2658883 29 100.0 32 ............................. TCTCTTCACTTAAACTGGACGCAGTTTGTTCA 2658822 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 2658762 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 2658701 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 2658640 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 2658579 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 2658518 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2685166-2684832 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ268976.1 Escherichia coli strain 53-1034 aervV-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2685165 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2685104 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2685043 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2684982 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2684921 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2684860 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGCGTGTCTTGTGCTGCGTTACGGTAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTAGCTGTTAGCCAAACATGTCGACCTGTTTGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGGCGGTGGTGCTGTAATTCACACCGGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGACTGGTTCTGTAACCCAAATTTGGGATCATTCGAGTTCCCCGCGCCAGCGGGGATAAACCGACTATCGGCGCTGTTCAGTTGGGACAGAAACAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTGCCCTTCGACTTTGCGGATCACGTCGTCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2686336-2685268 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ268976.1 Escherichia coli strain 53-1034 aervV-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2686335 29 100.0 32 ............................. ATCCCGACGGGCAACGCGATACCCGGTTTATT 2686274 29 100.0 33 ............................. ATTCCGGACGACGTGCTGGCGCGATTCCTCGGC 2686212 29 100.0 32 ............................. ACGATTGGGCAGCCAGAGTTGCCGCCGGGAAA 2686151 29 100.0 32 ............................. TCCGCGTGTCGCGCTGTCGCGCAGCCGGACGA 2686090 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 2686029 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 2685968 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 2685907 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 2685846 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 2685785 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 2685724 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 2685663 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 2685602 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 2685541 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 2685480 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 2685419 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2685358 29 100.0 33 ............................. CGTGCCCTTCGACTTTGCGGATCACGTCGTCTT 2685296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTCCCCGCGCCAGCGGGGATAAACCGACTATCGGCGCTGTTCAGTTGGGACAGAAACAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTGCCTTCGACTTTGCGGATCACGTCGTCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGACGGGGACGAATCACAGCAGCGTTATCGTGATGAGTTCCCCGCGCCAGCGGGGATAAACCGAAACCGGACGAGGGCGCGCTAAAACGTGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCTCTCAATTTGTAACGTCTGCAATGTCAGGCGAGTTCCCCGCGCCAGCGGGGATAAACCACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //