Array 1 111202-109847 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANDH01000029.1 Streptococcus agalactiae CCUG 44050 ctg120005050397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111201 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 111135 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 111069 36 100.0 29 .................................... AAAAAATAAATGACTTTAAAGCACTTGGA 111004 36 100.0 30 .................................... AGTTGATTGGAGCTTTGTTTTTATTTTCTT 110938 36 100.0 30 .................................... ACCCTTGTATGTTAAATCCGCAAGATTTTA 110872 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 110806 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 110740 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 110674 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 110608 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 110542 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 110476 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 110410 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 110344 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 110278 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 110212 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 110146 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 110080 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 110014 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 109948 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 109882 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTATTGGTTTTCTAAGTGCTCGACCAT # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 72449-73144 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANDH01000082.1 Streptococcus agalactiae CCUG 44050 ctg120005050450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72449 36 100.0 30 .................................... AAATAAAAAGGCAAAAACCTTTAATAAAGA 72515 36 100.0 30 .................................... AGTAAAATTAAAACCATCACCAAACAGTTT 72581 36 100.0 30 .................................... AAAAGAATAAGTATATGTTCTCATCTCAGA 72647 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 72713 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 72779 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 72845 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 72911 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 72977 36 100.0 30 .................................... ACCAAAACAAATACGAATGCTTGAGCGATA 73043 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 73109 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //