Array 1 983096-983734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022117.1 Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 983096 29 100.0 33 ............................. CCTGCCGAGGTAACTGATCCAATCTCTCCTTGC 983158 29 100.0 32 ............................. GTTCACGGAGCTTTAATTGATACAGCGCCAGT 983219 29 100.0 32 ............................. CCAGAAACGGCGCAGGACGAATTAGAGCAAGC 983280 29 100.0 32 ............................. TGCATCGAGTAGTTTGGGAAATGCAAAATGGC 983341 29 100.0 32 ............................. GTTTTTGCATAATTTTTCGCGCCGTCCTGAAT 983402 29 100.0 32 ............................. CGATAGCACCAAAAACGATATCGGGGCCAGTG 983463 29 100.0 32 ............................. CATGTTTTTGAAGAAGCATTATCAGGCGTACC 983524 29 100.0 32 ............................. TCCACGCGCGGCGGCGCTCGCCTCGCGAATAA 983585 29 100.0 32 ............................. GCTGATGGGGAGGGTATGTCTGCGGGGAATTA 983646 29 100.0 32 ............................. AAACCGGCGAGCCTTTCGGCTCCCCTGCACGC 983707 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACTTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATCATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATTATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCAGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 992219-992858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022117.1 Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 992219 29 100.0 32 ............................. ATTGCCGCATTGCGTAAATCGGTGGCATCGGG 992280 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 992341 29 100.0 32 ............................. GTAGCGACTTCTTTTGGCACGTCAAATTCAAC 992402 29 100.0 32 ............................. CAGCAGCAATATAGCGTCGATTCTGATGTAGG 992463 29 100.0 32 ............................. ATTTACCGGAATACCTGTCTCGCCAGAGATAA 992524 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 992585 29 100.0 32 ............................. AGCCGCCGCCGGCAGCTTTCGATCTCAGGGAG 992646 29 100.0 32 ............................. GCGCGCGAGCACTCAAAAAAACGACTTGCCCG 992707 29 100.0 32 ............................. AAAACCGAAAAGACCCCGTCAGCAGCCATAGA 992768 29 100.0 32 ............................. CGGTCGCGTATCAATGGCACATGGTCGCACAT 992829 29 96.6 0 .........A................... | A [992856] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGGGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGTCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATACTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAAGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTAGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTCTGGAACGATTCCCTCATGTAGCAACTGCTGGTAAGTATCCAGC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTGTCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCATCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //