Array 1 2896328-2895941 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483492.1 Serratia rubidaea strain NCTC10848 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2896327 28 100.0 32 ............................ CATACCGGCAGCGGCAACCGCTTGCTCCTGAT 2896267 28 100.0 32 ............................ GTGCGTGTTACCGATGCCGTCCGTCCACACGT 2896207 28 100.0 32 ............................ TGGCGGAACAGTCGGAACATCGTTGACTTCTG 2896147 28 100.0 32 ............................ AGTGCTCGAGAGTCCCGTGCAGCGTGGAAGAA 2896087 28 100.0 33 ............................ ATCAAAAGTAGCAGGGAATCAGAAGGCAAAGAG 2896026 26 89.3 32 --................G......... TGATTAAGATTGTCAAGGGAACTCCCCTGGTA 2895968 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGAGTGGTCGTCTGCTTAGGTACAGCGACAGTCTCGTGTTTCATGGTGAACGTTTGCTGTGCACAGCCGGTAACCGTCATGGCAAGCACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCCTTTTAACTAATCAATATAAAGCGCAAGGATAATGCCATGCTTACAGAAATTTACAAGTGGAGGTAACAAGAAATAGCGGGCGGGGCGGAGAAAAATGCCGCAGAACACAGGCGATAGTTCTCGGGCTTTCAACGCGGCAGCATGGCAGTGCGCCAGAGGGCAAGATGCGGCCGCAGTGCACGGTAACGTATGGTTGGCTTAGAACCCTTTTTTTCACTCTGTTTGTAACCCATTGATATTTAATGCTCGGCTTGGCAGGTGAAAAAAAAGGGTATCGGCGGCAGAAAGGGGGAAAAGGCTTTAATTATTAAGCTGCTGAGCTTAAACTCTAACA # Right flank : ACGCCCCGCGCTTAGATATTTCACTGACCATCTTTATTCACAGCAGCCTTATTGGTGGTATAAAATATTTTTATTGAAAACGCTGGTTTGCTATGGGATTGAATGAAATATGGAAGTGTTAAACAGAACATCCGCTGTGCTCAGCTTGCCGTTAACCATACTGTGTGTTTCATTCTCCTCGCTGACAATTATGGGAGAACACAACTCGCTGGTTGATGTTTTCCTGTCGGTGATTGTTTTTTTTGGTTTTCTTAATCTATTCCGGATAGCAGGAAAGTTGATCGCCTGGTTTAATGGGAACGCTAACCAGGCATAGACATGAAGCGAGCCTCTGCTATTTCTGCCGGTCAGATAAATAACGGGAACCCTAGGGTTCCCGTTATTTATTGGTCATTATCGCGTGGCGAAAGGGGATTAACGCCCATCCACGGCTGCCGGGCTGTCCGCCTCGGCCAGCGCATCCTCCAGCACCTCGAACAGGCGGTCGATCTCCTGGCGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4444867-4444719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483492.1 Serratia rubidaea strain NCTC10848 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4444866 28 100.0 32 ............................ ATATGGCGATACCGCATCTACCCAGGGGCAGC 4444806 28 100.0 32 ............................ AGGGAATGAAACCGGCGGTTCATACCAGCGAT 4444746 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTAATTTAATGTTTTATTTGCCTAGGGATATTAAATATAACTTAAAGGTATTGTATAAGGAATGAATGCACTGAAATTTTTAACTATATGATTTTTATTGAGGTTGAAGTTTTTGCATTGATAAAGTAAATGGCAAGACGTTTTATTGATTTATGTAAGTGGGAAAATGAAACGTTTCTGAATAGAAGCGCTATATTTTTCATTATCATTCAATAATGGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCTATCAGCCATTTGCTAGCTATGCCGACAGCCAGTGAGTTTAGTGCTTATGGCCTGAGTGCCACTGCTAGCATCCTTTAGATTCTAACCCTTTTTTTGTGAAAAACTCTAACCTATTGATTTTTAATGGTGCTATTGAAGTGTCAGAAAAAAGGGTTTTTGGTCAAATAATAAGGGATTTTCTGTTTAAACAGACGATTAACGCTATACTGCAACA # Right flank : AATCATAATTCAGGCCGGGTTAACCGGCCTTTATTTAATCTGATTTATTCATTTTTTTTTCTAATATGACGAGCCAGCATAAATGTCAGCTTGCATAAAATTATGGATATTATTGTGTTTAAAAATAAAACTATTGCTATAGCCATGAAATCCCATGGTTCCGGATACCCCCCAATAATATCTGTAATGTTTGTTGCGGTATCCAGAGACATTACATGATGTATGTTGCGCCTGATGAAGTGATAAAATGGAAACCATACGCCAACGTTCATCAGGAATATGATGAAAACAGCTAATTTTGCCAGTATTAAAAATGCCTTTTTCATCCGCTTACCTTGCATTCTCCGTTGCTAATCACATCAATGATACCACACGCGCGCAATCTCATATTTCTGATATTGATTGTTTTAGTCCTCAGTAGAGCACTACGAATTGCTGCAAAGTCTGAGTGATGTTTTAGCGTGATACAACCATATGATATCGTTCCCGGATGCAGTCTA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4453403-4453191 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483492.1 Serratia rubidaea strain NCTC10848 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4453402 29 100.0 32 ............................. CCTCATATCTGTTATTACTGGCTGTTATTACG 4453341 29 100.0 32 ............................. CGGGCGATCGAGTGCGGATTCGTCAACATGAC 4453280 29 93.1 32 ............T........G....... GCGAGGGAGTCACCAATCATGACGAAATCATC 4453219 29 86.2 0 ............T..........C..T.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCCTACTGCATTCCTTCCACCTGGGCCACCAAGGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGCTGCTGTTGCTTGGCGCGGTGTATACCGTGATTGGTATCGGGGTGGGTCTGGTGCACAACAGCGTGGCGCTGCGCAGCCTGTTCCGTAAGCGGCGGGCGTAGTTTTAAAGGACAAAGCCTGCTCGGTACGTGCTGCAGAAGGTGAATGATTATATGTTCGGTGCTGCGCCTATTTTGATAGCGAAGTGAAAATAAACTGATTATTTTTCAATTGGTTATGCTTTCCCAGTAATGGCAAAAAGTTGGTGGCTTTTTTAAGCGCTAAAAAATCAATATAATTCAATTGGATATCTTTGGA # Right flank : AAACCGTAGAAGAACAGAAGGGGGGCTGTTACTGCACCAGCTCCAACCCGGCGACGCGTCGCCAGTAGCCGTTGCAGTCGCTGCTGCCGGCCAGCGCCAGCGGTTGCTGAGCGTTTTCATTGGCGCGGAACTGCTCGAGCATCGTCAACGTCTCCACGCCCTGCGGCGACAGCCGCACGATATCGACCAGCTCCTGCATGCCGCTCAGCTCATTGCCCAGGTTGTAGCAGTAACCACTCATCGTCTGAATGCCGTTGAGTACGAACACCTGCTGGTCTTCCTGTGAGCGCATGGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAACGGGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGGTGACCGTAGCCCAGCACTTCCACCTCAAAACCGCGGCGGAAACCCAGCTCGCCGCACTGCTCCAGCACCTTACCCAGCCAGTCGCGGGACAGCTCCACCGGCATG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //