Array 1 760-1704 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JWNY01000012.1 Neisseria meningitidis strain Nm441005 Scaffold12, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       760	    36	  97.2	    15	........G...........................	CCCCTTGCCACTCAA               	Deletion [811]
       811	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
       877	    36	 100.0	    30	....................................	TTTTCATCGTAACATAGTTGCTTGCGCCAA	
       943	    36	 100.0	    30	....................................	ATCAAAAACGCTCAATATAAAAAATCAAAA	
      1009	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
      1075	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
      1141	    36	 100.0	    30	....................................	GACGTCAAATCGCGTTACGCCATGGCGCAG	
      1207	    36	 100.0	    30	....................................	AATCGCCTCGAGCCATACGGAATCAAGCTC	
      1273	    36	 100.0	    30	....................................	ATACGAACTCATCCGGAGCCACGCCGAGCC	
      1339	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
      1405	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
      1471	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
      1537	    36	 100.0	    30	....................................	ATGTTTTTGGCGAGATGGTCGTATGTATCG	
      1603	    36	 100.0	    30	....................................	TCCCTTGGGATCTCATGCAATAATTTCCCC	
      1669	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  99.8	    29	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   ACGGTCGATGTGTTTGGCAATCATGGCTTTTGTNNNNNNNNNNCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//