Array 1 191346-190038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPLW01000008.1 Amycolatopsis sp. MJM2582 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191345 29 93.1 32 ...........C................G TACCGGCAGCCCCGGCGAGATCTCCAGTTCGC 191284 29 93.1 32 ...........C................G TCCACTGGGCCGCCACCACTCAGGAAGAGTGC 191223 29 93.1 32 ...........C................G GTGCCGGTGATCAACCTCTACACCGGCAGCAG 191162 29 96.6 32 ...........C................. GACCGGTTCGTCTTCGGCCGGGCCGCCGTCGG 191101 29 93.1 32 ...........C................G GACAGCTTCTGGTTCGCCTCCCCCGCCGCCGA 191040 29 93.1 32 ...........C................G CCGTCCGGAGTCGTCCTCCTCGGCGGCGAGTT 190979 29 100.0 32 ............................. ACGAGCCCGTAGGCGGGCGCGCGGTGGCGGCC 190918 29 100.0 32 ............................. TCCCGCTTCGGCCCGGACGGCTGGGTCACCAA 190857 29 100.0 32 ............................. GGCAGGTAGCCCAACCGCGTCTCGTAGCCCGG 190796 29 100.0 32 ............................. ACGAGCCCGTAGGCGGGCGCGCGGTGGCGGCC 190735 29 96.6 32 ............................G GTGTTGCCGGTGATCGGGTTCTTCACGTTGAA 190674 29 96.6 32 ............................G GTCCGGACGGTCGCGGGCATGTCCGAGCCCGA 190613 29 100.0 31 ............................. GGTTTCTGGCCGATAGACCTCCTGCAATCGG 190553 29 86.2 32 .G.TC.......................G GCTGCGGCCGCAGACCTGGCACGCGGGGCGCT 190492 29 100.0 32 ............................. GGCTGCGGCAACGCCGTGTTGAACGAAGCCGC 190431 29 96.6 32 ............................G CCGACGCTGGTCGTCCCCAACCACATGCTGGA 190370 29 100.0 32 ............................. CAGTCCAGCGAGAAATCCTGAATCGACAGATA 190309 28 86.2 31 ..........T.....T...-.......G ATGCGGCAGTAGAACGAGGAAGGACGCCCTA 190250 29 86.2 32 ...TCT.....C................. GTCGAGATCGCCGCCGCGGTGCAGGCGCTTCG 190189 29 89.7 32 .................A...G...C... TTCGGAACCGGCGTCCCAGCTGTCCCAAGGGA C [190180] 190127 29 96.6 32 ........G.................... GCGCGGTTGACTCGGGCACACGCCTCATGATG 190066 29 86.2 0 .........A.....C...........TG | ========== ====== ====== ====== ============================= ================================ ================== 22 29 94.7 32 GTTCTCCCCGCGCGAGCGGGGCTGGTCCC # Left flank : AACCCCGATGTCGTCATGCTCTGGGACTACAACGGCCGCAACGTCACCGGCGGCACAGCGTACGGCGACGACCTCCCCGAGGAACCCGAATGACCGTCATCGTGGTCACCGCCTGCCCTGTCGGTCTGCGCGGGCACCTCACCCGATGGCTCCTCGAGATCTCCCCAGGTGTTTTCGTCGGAAAAGTCTCCGCCCGCGTACGAACACTGATGTGGCAACGCGTCATCGACATGGTCAAAACAGGACGCGCCATCATGGTCTACAACGCTGACAACGAACAAGGACTCGCCTTCGAAGTCCACGCACACGACTGGACCCCCGTCGACTTCGACGGCATCAACCTCATGCTCCGGCCAGCACCCCGACAAACACCCATCACCGGCGACCGCAAGACCGGCTGGAGCAACGCCAGCAAGCGCCGCAGGTACGGAAGCCGTTAGCGCAGCCTCAAAGTGAACCAAAAACACCGTTACAGCCTTTAAACCTGCAGGTCAGCATGT # Right flank : CTGTTGGGCTGAACCAGACCGAGCTCGCCGAGGTTCTCCCCGGCACCTTCGCATGGACACGAACGAAGGCCAGCAACTCCTGCTCGCCCCGCTTCCGCCGTTGACGACCGGCACAACTACAGCCGCAACTGCGGTAAGACCGACTCTCAACCCGTCAACGGATCTCCTGCTACGATCTCCCCATGACCTCCCAGAAATTGGGAGAGCTGCCATGTGTGGGGGTTCAATCCCCCCTCGGACACCGCTTTAGGTGAGATCTCACCAGTTGCAAGAACCTTCACTCAACACTACCGAGTGAAGGTTTCTTCTATTTCAGAGGCCTGCGACCGCTCTCCGGAGGCGGAGCGGCAATTTACGCAGCGGATGCCAACTCGGCAGCTTATGCGAGGTCTCGCCAGCTTTCTGAAGGCCCTCAGCGCCGGAGGAGACGACGGGACCAGGAGGTCGAGCGCATGTCATCGGGATGTGAGTTCCGGGATGGCCGACAGCTCGTCCGGTGA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGCTGGTCCC # Alternate repeat : GTTCTCCCCGCCCGAGCGGGGCTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 201521-200407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPLW01000008.1 Amycolatopsis sp. MJM2582 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 201520 28 82.1 33 ..T.....C....GA......T...... GTCGATGAACGGCAGCAGTTCGGCCGGCACCTC 201459 28 82.1 33 ..T.....C....GA......T...... ACAGGTCCCGGATCGTGAAGGTGTCCTTCGTCG 201398 28 78.6 34 ..T.....C....GA...A..T...... CGGGCCGCGCAACGAACCACCCTGCTCGCCCTGG 201336 28 82.1 33 ..T.....C....GA......T...... CCCGACGACGGCCGCGAACTTCATCGTCGGCGT 201275 28 82.1 33 ..T.....C....GA......T...... CGTCGCTTGCGGTCCCCAGGCGAGCGTGAGCGG 201214 28 85.7 33 ..T.....C....GA............. CCGCGGTTACCGTGATGCCGCTTGCCAGCGGCG 201153 28 82.1 34 ..T.....C....GA......T...... GGCGCTGTTGTTCGCGTCGGTGGCGAACTACCAG 201091 28 78.6 33 ..T...G.C....GA......T...... GGCGAACGAGCCCTTCGGCGTCACGCCGACCTG 201030 28 82.1 33 ..T.....C....GA......T...... CAGGGTCGGCGGGGCTGTCCGAGACAACCGCGG 200969 28 78.6 40 ..T.....C....GA......T..A... TTCTAACGGCTCAAAAGACTAAAGACTACGGTCTCTGGCA 200901 28 82.1 33 .......TC.....A......T..A... CTTCGGTACCGCACTGGACATGTGGAAACAGCG 200840 28 75.0 33 ........C...TTA....ATT...... GGCCGCCCCCGCGTTGGCCTGGTAAAACCGTTC 200779 27 78.6 33 ........-...TGA.A....T...... GGCGGGGATGAGGAAGGTCTCGGGTTCGCGACG 200719 28 71.4 135 AC...........GA..C...T....AT CCACACCAAGTCCCTGCCGAACCAGCTCGTCCAAAGAAGGCCGGACCACCTGGTCAAGCGTTGGGATCCGACGCGACAGTTAGAAAACTAGATGAAACTCGTCAGTACGATCTTCAAACAACTAGGTCAAGCAGA 200556 28 100.0 33 ............................ CGCCTCCGGGCTGCTGACGCCGTACGGGAACGA 200495 28 100.0 33 ............................ CCAGGGGCGATCAGTACTCGAAACCGTGGTCGG 200434 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 17 28 83.6 40 GTCGTCCCTGCGCAGGCGGGGCTGGTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCCCCGACACCCCACCAGAACCCGTTT # Right flank : GTAACGACCCACGGGCCGGTTGGTCCCTACGAAATCTCGTCCGGAACGATCAAGGCTGCTCTTTCACTCACTCAAACCCAAGCCGCCGGTCGACCACGCCCCGAACAGCTAGGCCATTTGAATGAATCGGTTCGCTGACCGAAACGGACGCGAGGCTGGTGAGGATCTTTGGGCGAGGGAGGTGGGTCGTTGCGGATCCAGGAGGACATCCTGTCCTCGGTGTGGGCGAAGTCCAACCGGGACGAAGCTGGAGCTGTCACGGAATGGCTTCCTTTGCAACAGCACCTGGCCGATACGGTTTCCGTTGCCCGGCTACTGATTGACCATTGGATTTCTCCGCTGGTCTCATCGATGGTCGAGCGCGATCTCGCGGGAGACGGCGCTGCCTTTCGAGCGGTTGTGTGCTGGCTGGCAGGGTGTCATGACGTGGGGAAGGCCAGTCCGGCGTTCAGCTGTCAGGTTGATGTGCTTGCGGATCGTATGCGTCAGCGCGGTTTTCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTGCGCAGGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 204182-202323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPLW01000008.1 Amycolatopsis sp. MJM2582 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204181 29 100.0 32 ............................. ACTGGTCACGAGCGGCGCGGGACAAGATCTCC 204120 29 96.6 32 ............................G TTGAGCGGCAGGGCGATGAGGTGCAGGAGACC 204059 29 96.6 32 ............................T TCAGGCGAGCACGTATCACCTGCCGCCACAGG 203998 29 96.6 32 ............................G CGAGGCGCCTGGACGAGTTGATGTCCTGGTTG 203937 29 100.0 32 ............................. AAGAGCCTCCAGAACTGGCATGTTGCCGCTGA 203876 29 100.0 32 ............................. CCACCCTCCTTCGACTGGAGCGCGAGCGGAAC 203815 29 100.0 32 ............................. CGCCGTCTCGCCGCGGCGAAGCTGCTCGACCT 203754 29 100.0 32 ............................. TTCCGGTCTGGGCCGTCACACCCAACCAGGAA 203693 29 100.0 32 ............................. TGGAGCGGCAGCGAAACCACCTGGAGCAGGCC 203632 29 96.6 32 ............................G GCCGCTCGCTCACGTCCATGGTGAGCGAGCTG 203571 29 96.6 32 ............................G GCCCTGGTCTTCACCGATCAGACCAGAACGCC 203510 29 100.0 32 ............................. AGGCCGAGGATCACCGCGCTGGCGCACGCGAC 203449 29 96.6 32 ............................A CGTTCCTAGAGCCGGTCCGCTGGACCCTGGTC 203388 29 100.0 32 ............................. GGGACTGTGACGGTTAGTTCGCCGGACGCGGA 203327 29 96.6 32 ............................G TCCATCCGCGCACGCACCTGGTCCAGCAGGTA 203266 29 96.6 32 ............................G CCATCGGTCAGAAACACCCGGCAGGCGGCGAA 203205 29 96.6 32 ............................T ATGCGGCCGCCTTCATCACAGGAACTGGTGAG 203144 29 96.6 32 ............................G TCGAACGACTGGGGCAAGACGATCTGGAAGAA 203083 29 100.0 32 ............................. GCCAGGGAGCGCGAGCCGTGCCAGAGGTCGAA 203022 29 96.6 32 ............................G GTCCATCACCGCGGACAGGGCGGTGGCCTTCC 202961 29 96.6 32 ............................G GCGGCGGCCTTGGCCTCGTACCAGTTGGCGAC 202900 29 96.6 32 ............................T GTGCGGCGTTTCACTGGTCGCCGCCCTTGCGG 202839 29 96.6 32 ............................G TTCGGCATCGAACGGCTCGGGTTATGGCCGCA 202778 29 100.0 32 ............................. TGGTCAAGGGCACCGCGATCGCCGACCCGACC 202717 29 100.0 32 ............................. GGGCCCCACGGGTCGTCAGCCTCGTTCCATTG 202656 29 100.0 32 ............................. GACCGATGGGACGAAGGCGAAGGCATGGGCGG 202595 29 100.0 32 ............................. GAGTCCATGTGCACCACCCCGGGCATGAATCC 202534 29 96.6 32 ............................G TCGTTCCCGACGCTTCCGAGCGCGATGTCATC 202473 29 96.6 32 ............................G CCCCGCCTGTGGACATGCTGTTGCGAGACCAG 202412 29 96.6 32 ............................G CCGTAGACGTTCGCGCCGCGCGCGACCACCCG 202351 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.1 32 GTTGTCCCCGCGCGAGCGGGGTTGGTCCC # Left flank : CATCGCGCCAAACCCACCGACCAGAACCTCGCCTCCACCGACCACATTACCGCGTCACCCGAAACTACAGGCCTACGCGCACCGACCTTCGCTGAACACTGGGGCGCCAACACCAGCCGAACCGACCTATCCACACACCGCTACCGCCGAACAACTGATTCAGGTTCACTACCTCCGCGAACGTTCACAAGGCCGAGCGCCGTCCGGCGCCGAACTCGACTGCATCGCCGGAACCCACAACTACGGCCGCCGCATCCTCAGAGATGGCGCAGCGAAGGCATCGACTCGCACCCAGCCCCCCGAGCCGCACCGGCCACGCGAAACACCGTCAAGGTCCCAAACGACAACACCACCCCGACCTTCCGCACGCCGACACACCGCAGAACGACAACTCACCGAATCAACGTCCCAAGGCTTGACCCGAACCCATGATCAGCATGAGCACTACCAAACTGAACAAAAACCAGCAGTATGATCTTCAAAGGCCCAGGTCAATTAGT # Right flank : GGCGTCGTGAAACCACACACCGCCGGGGCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //