Array 1 560999-567890 **** Predicted by CRISPRDetect 2.4 *** >NZ_UETS01000002.1 Trichococcus pasteurii isolate Trichococcus_pasteurii1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 560999 32 100.0 35 ................................ CTTGTGCCTTGTGACGTCGTATATTCCACTGTATG 561066 32 100.0 35 ................................ AATCATAGATATCCTCGCTTTGGTCAACTCTGTAT 561133 32 100.0 34 ................................ ATTGCCAACGTCAAAGCCGTTTGCGTATGGATTA 561199 32 100.0 34 ................................ AGAATGGAATGTCATCATCACTAATATCAATAGA 561265 32 100.0 34 ................................ CAATTACTAAAGGTATGGCAGACGGCGCAGAAGG 561331 32 100.0 35 ................................ GACGATATGGATATTTGTCTAATGGACAGCGCCTT 561398 32 100.0 34 ................................ ACATTTACCATGGACTCCGAAATTGACGTTGTGG 561464 32 100.0 35 ................................ TTGGACAGCGTGAATAGCGTTATAAACATCATTTA 561531 32 100.0 35 ................................ CAAACGGAACTCAAACCGCCACTCAGCACACTTCC 561598 32 100.0 35 ................................ AATAGACTGTACAATATAATCATTAAGGAGGTGAC 561665 32 100.0 34 ................................ GGCACTAGGCGCTTCTTGTTAAAATCAGCTATCC 561731 32 100.0 35 ................................ CGGGTTGTTCAGAAGCATTTTAGAAAAAAGATATT 561798 32 100.0 34 ................................ GTCAGGTAACGCCTGAATAGTAGTCTCGTATCCG 561864 32 100.0 34 ................................ CGTTTGCACCATATCGACGATGTCGCCGCCCCAC 561930 32 100.0 35 ................................ GAGTAAATGGAACGGAAGCGACTTTAAAAAGATTC 561997 32 100.0 34 ................................ GATTTTGTCTTGGAAAGTATCTGGGTCATCTTTG 562063 32 100.0 35 ................................ GTTTCATCGTATTTGAAAAAATGTACGTTATCGCA 562130 32 100.0 34 ................................ GCCTTCGCAATCCTCTAAAGGCATTTTTATTTCG 562196 32 100.0 34 ................................ GCCATCGTTGTAACAAATAACCACTTTCTTATTC 562262 32 100.0 36 ................................ TCCGCTGGTATCGAACGACGCCTTCAAGCACCTGCT 562330 32 100.0 35 ................................ AGCAGCAAAACTAAAACGGCACGTGATCCGGATAA 562397 32 100.0 33 ................................ AGGTACATTATTGAACGGCAGCGCCCTTTCTTT 562462 32 100.0 35 ................................ GATTTAGGTATTTTGACTAAGGATGAATATGACAG 562529 32 100.0 35 ................................ AGGCACACATTTATTTCGTTGATGGTTGAGCAAGG 562596 32 100.0 34 ................................ TGACGAAGCTGAGTCCTGGTCCGAACTCCGGTTA 562662 32 100.0 36 ................................ TCCGGTTGCGGATCGCCATTCCAGTCGTTAATCCGA 562730 32 100.0 33 ................................ AATCGTACAGTTGGGACAGCTCAAACAGGCTTG 562795 32 100.0 34 ................................ AGGTCCTGCGCGTTGCTCTCATTGTTTGTGTCAG 562861 32 100.0 33 ................................ CAAGTCAGTGGTCCGGTCTTCACTTCTGTTATG 562926 32 100.0 35 ................................ AAATTCTTTGGCTTGAATAATATCTAATCGAACCA 562993 32 100.0 35 ................................ TTCGCTCACCATGATATAGCGCAAAGTTGTTGATG 563060 32 100.0 35 ................................ TTTGATCAGCAGCCAGATGAACGTGAACACATTGA 563127 32 100.0 35 ................................ CGTGATTGTCTTGAATTGTCCAACGGCTTTATTCC 563194 32 100.0 36 ................................ TGTTGGTCAGGTGTGTGATTGTCCAGGATTGCTTTC 563262 32 100.0 33 ................................ ACCATTTTCGCCCCACCAACCACCTGCATTATA 563327 32 100.0 35 ................................ GCCCCAAGGTTTCGAATCGATCGAATATCCCGCTT 563394 32 100.0 35 ................................ AATACGACAGACACGGATGCGTGGCTGTCTTTTAC 563461 32 100.0 35 ................................ GATCGCAACAAAATCACGGCCGTTTTTGATGGGGT 563528 32 100.0 34 ................................ TACGTAATCCAAAACATCCCCTACGTCCATCCAT 563594 32 96.9 34 ........T....................... ACCAACCAATCGTCCTAGTTGCCGCTTGTCCATC 563660 32 100.0 36 ................................ AGCGCCTTCTGTAGGCCCGTTGTATCGCCGTCTAAC 563728 32 100.0 35 ................................ GACGGTATCGAGTACAACGTAATAAGGGCATACGA 563795 32 100.0 34 ................................ AGTTGTTTCCGTAGTAGTTTTTGTTTTTACTGCA 563861 32 100.0 35 ................................ GTCAAAAATTGCCTTTTCCAGTTCATTCATATCGA 563928 32 100.0 33 ................................ ATCTGCAGTAAGTGAAGTTGCAGTCGTAACAGA 563993 32 100.0 35 ................................ TTGACTCGTGCAAGAACGGCCATCTCCGAGAAACG 564060 32 100.0 35 ................................ GATACGAATGAGTTCCGGTATTCGGATCAGCTGTA 564127 32 100.0 34 ................................ ACCACAGCCGCATGGATCGCCTGCTGCAGACCGG 564193 32 100.0 33 ................................ ATTTTAGAGTCAGCTTCCGGAACAAGCTCTTTG 564258 32 100.0 34 ................................ TGAAATGTATTTAGCGATTGCTTCGTTTGTGCTT 564324 32 100.0 35 ................................ CGGTCCTCTCGCACCCGGTCTATGCTCTCGTCTCC 564391 32 100.0 34 ................................ TTGGATATATTCCCGATCTGGTTCAAAAGCATCG 564457 32 100.0 35 ................................ ACGTTTTGCTCTAAATGAATTACCCTCGCATCCAC 564524 32 100.0 34 ................................ TACCAGGGCACGCTCACGCGAATCCTCACACGCA 564590 32 100.0 35 ................................ CTCGAAACGTATTTTGAGTTTGACTATATCTGCAC 564657 32 100.0 35 ................................ TACCAGGGCACGCTCACGCGAATCCTCACACGCAT 564724 32 100.0 35 ................................ GCTACTGTACTGGCCGCCCAATTAGGCTTAGATGC 564791 32 100.0 35 ................................ CGCTAAAAGATTATGCCTTGCGAATCCCGAACGCC 564858 32 100.0 34 ................................ TACATCACAGAAGCACAGATATTAACAAGTATCC 564924 32 100.0 36 ................................ TGCATCCAGTTGAGTAGAAAACTTCTACCAGGGCAC 564992 32 100.0 35 ................................ CATCCAATTGTAAAGCCGTTACACTTGTTACAAGT 565059 32 100.0 36 ................................ AACAAAAACGCGGTAACCACCGGATATTATGTATCG 565127 32 100.0 35 ................................ GGCGGGATATGGTATCACCGATCACATAGCTATTC 565194 32 100.0 35 ................................ AGGCAGTGACGCCGCAAGAAGTGAGAGTTGCGGAC 565261 32 100.0 34 ................................ TATCAACGTTATTCAATAAGCCGCTGAACACCAT 565327 32 100.0 35 ................................ ACAAAGAAAGAATTAAGTCACGGTAATGCGATTGT 565394 32 100.0 36 ................................ CGGTATTGGCCGGAGTTGTTGGCGGATTTGTTGCCT 565462 32 100.0 35 ................................ GTGGTGACACCGGAATGTGGCAAGTGATGGTTGAT 565529 32 100.0 34 ................................ CTCCTGGTTTGTTGTGTATTAGTTGTTTGTTAAA 565595 32 100.0 35 ................................ TTACGTTTATACACGAAAATCGCTAATACCCCTCT 565662 32 100.0 33 ................................ TACGGTAGCCTCTGCGTTGCGACGGATGACAAC 565727 32 100.0 36 ................................ AACGTGCGCCACATCCGCATGTTCCTTGCCACACCC 565795 32 100.0 35 ................................ TCAGTTGGCAGAAGCTGATGCACGAATCAGCACGA 565862 32 100.0 33 ................................ AGATAGGTTATCCAAAACGATGTTGTCGTAATC 565927 32 100.0 35 ................................ ATGTATCCAAAATTGTTCGGGTGGACATTATCGGT 565994 32 100.0 33 ................................ AAACCGGTAAAAGTATCAGCACGAAACTCCCAT 566059 32 100.0 34 ................................ AAGGGAAGAACCCGCGTGTGTTAGCGCGTGACGT 566125 32 100.0 35 ................................ TCATTCCCTTAAATTTTACCGCGACACCCGTCCTA 566192 32 100.0 36 ................................ CGTCTGGTGATTGGCGCTTCGATGAAATTGATATCC 566260 32 100.0 34 ................................ TTTTCGATAATAGCTATTAGCTTAGTGCCGTAGC 566326 32 100.0 33 ................................ TATCCTCCCTTTCGGATTCTTTCACACCTTCAA 566391 32 100.0 35 ................................ TCGAATCAGCTTCCGGAACAAGCTCTCTGGCCAAA 566458 32 100.0 37 ................................ AAACGTTTCGGCATTGAGAGCAAATACCTTGCAGTTA 566527 32 100.0 35 ................................ TTCCATGGCTTTTCTTATTTTGTGCATATTGGCTG 566594 32 100.0 34 ................................ CCTTATGAAACGGTAACCGCCACGCATCCAACTC 566660 32 100.0 36 ................................ AATTGGTGAACTTGAAAAAAGCGTGGATGATGGACT 566728 32 100.0 37 ................................ CTAGTTCACTCTTAAAACAATGGGAACTAGGAGCAAG 566797 32 100.0 35 ................................ ATCACATTGAATACGGCATAGAAGATAAAGCGCTT 566864 32 100.0 33 ................................ TAAAGCGTCACACCAATTTAACAAAGCAATCAC 566929 32 100.0 34 ................................ AATAGAAATAGTTCTTTCCAGCGATCCAATCGAC 566995 32 100.0 35 ................................ AATCCGGTTATTTTGCCGATTGTGTCACTATATTC 567062 32 100.0 35 ................................ TTTAATGTTTGTGTCAATGGTCTATACGACATTGA 567129 32 100.0 34 ................................ ACGCGGTTTATCGGACGGTTCCGGCAGATGACAG 567195 32 100.0 36 ................................ ATCTGCGAGCAGATTATCCGTGAGAACGTGACGGAC 567263 32 100.0 35 ................................ ACATAGGCAGCACTGCTTACAAAATAAAAGCAAGG 567330 32 100.0 34 ................................ TCTTATGAAGCGATAACCGCCACGCATCCAACTC 567396 32 100.0 34 ................................ AGAACAACTATATAAGGCTTGTAAGATTGTAACG 567462 32 100.0 35 ................................ CCCGGTTTTACGCAAGTAGAGGACGCTATCCCATA 567529 32 100.0 34 ................................ ATAAGCACCACCATTTATAGAACGAGTAAACCGA 567595 32 100.0 34 ................................ CCGTCTGCCCCTGTTATATCGCTTGCTACGTCTG 567661 32 100.0 34 ................................ TACAACGCTTTTAAGCTCGCCCTTGTCCTTGCTT 567727 32 100.0 34 ................................ GGTTCTGGAAATTGTCGTTGTATAGTTCGCATTT 567793 32 100.0 34 ................................ GGTTCTGGAAATTGTCGTTGTATAGTTCGCATTT 567859 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 104 32 100.0 35 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : ACTGTTGTCAAGACATATTCGTGGTGATCTGGATGAATATCCACCGTTTATCTCATAGAGGTGATGATTCTGATGATGGTATTAATAACGTATGATGTAAATACTGAAGATCCATCTGGAAGGAAGAGATTGAGAAAAGTTGCAAAAACGTGTATCAACTATGGTCAGAGAGTTCAGAATTCGGTTTTTGAATGCACGATTGATCCAGCTCAATTTGTTAAAGTAAAATCACAATTGGACGGCATAATTGATCATCAAAAAGATTCACTTCGATTCTACTTACTTGGAAAAAATTGGATAAGTAGAGTAGAAACTATGGGGAGAGATGGGGCATATAATCCCGAATCGGATGTTTTCTTATTGTAGCGAACCTGTGTTGAGCATAAAAAGTCGGGTCAGTCGCGCTAAAAAAGGATTATTTATCTGGATAATATACAAAATATCTTCACTATTTCGCTTATGTAGTGTAGATATTGGATAGGAACCGCATAAAATAAGCA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCGCACTCTACACGAGTGCGTGGATTGAAATGGTTCTGGAAATTGTCGTTGTATAGTTCGCATTTGTCGCACTCTACACGAGTGCGTGGATTGAAATGGTTCTGGAAATTGTCGTTGTATAGTTCGCATTTGTCGCACTCTACACGAGTGCGTGGATTGAAATCAAGGTTATAAGGGATGTCGGCAATTACCAGTTGCGTCGCACTCTACACGAGTGCGTGGATTGAAATGATGTAAACGAAGAACTAATCGACATCCTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 568128-568903 **** Predicted by CRISPRDetect 2.4 *** >NZ_UETS01000002.1 Trichococcus pasteurii isolate Trichococcus_pasteurii1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 568128 32 100.0 34 ................................ GGTTCTGGAAATTGTCGTTGTATAGTTCGCATTT 568194 32 100.0 34 ................................ GGTTCTGGAAATTGTCGTTGTATAGTTCGCATTT 568260 32 100.0 35 ................................ CAAGGTTATAAGGGATGTCGGCAATTACCAGTTGC 568327 32 100.0 36 ................................ GATGTAAACGAAGAACTAATCGACATCCTGCCCGGC 568395 32 100.0 35 ................................ AATATAAACTGGATGCGAAGACGGATGCGGAATGC 568462 32 100.0 36 ................................ TGTGATTGTTTCGTAACCGGTAAGGGTGGCGATATT 568530 32 100.0 34 ................................ GACACACCGACAACGTGGGGCTATTCGTACTCCG 568596 32 100.0 42 ................................ TCTGACAATCGCAGCATCAGCATCAGCGCGGACCAACGCAAG 568670 32 100.0 36 ................................ CTTGAAGTCATTTATTAAAGGGAACTACGAAGGCGG 568738 32 100.0 35 ................................ AGTTGGTCGGATCCGCTCATGTTGTCCCAGCGTTG 568805 32 100.0 35 ................................ TATACAAAATAAATAGATGAGATTCTCTCAAAAAT 568872 32 87.5 0 .........CT.GT.................. | ========== ====== ====== ====== ================================ ========================================== ================== 12 32 99.0 36 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : CGTCTGCCCCTGTTATATCGCTTGCTACGTCTGGTCGCACTCTACACGAGTGCGTGGATTGAAATTACAACGCTTTTAAGCTCGCCCTTGTCCTTGCTTGTCGCACTCTACACGAGTGCGTGGATTGAAATGGTTCTGGAAATTGTCGTTGTATAGTTCGCATTTGTCGCACTCTACACGAGTGCGTGGATTGAAATGGTTCTGGAAATTGTCGTTGTATAGTTCGCATTTGTCGCACTCTACACGAGTGCGTGGATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT # Right flank : TTAGCCTATTTTATAAGGCAACTACAGCTACTTTGATTTACATGGGAACATAATTTGTTATTAGATTATGTTCCCATGTGTAATGCATTCGTATTGTTCTATTACACTCTCCAAAATAAATAAAGACTGGCAACTAATCCTTCACGGATAAAATTGCTAGTCTTTATTTGTAGGGAGTATTTCAATCACAATGGCGTTTTTCCAGTTTTCTCTTAGTCCATTTAAGGGATAGTTTATTATTTCTGAGTTGTCATTCAAAATCTCTTCTAAATTATCCATGAACAGATTCCATTCAGACTGTACCTGAAGTGACCTTCATCCTCTCCAGAAAGGATTGTTATAAAGTTTTCTACATTAGAGGGTTCCTTCATCAATTCCCTACATCTATACTTTTTTTTGAAGTATCTTGGGCGGTTCTGATGTTCTTCAATTGCCCGCACAACTTGTTGGTATGTTTCAAAAAAATAAGTCAAGCTAATCCAACTCTTTATGCGCTAAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //