Array 1 405194-403939 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000011.1 Streptomyces daghestanicus strain NBRC 12762 sequence11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 405193 30 96.7 31 .............................T CGATCTACCACGTCGCGATCTACGCGGGCGA 405132 30 96.7 36 .............................T CTGCGGGGACGCCCTTCAGGCCGCCGCCGGCGCCGG 405066 30 96.7 31 .............................T GCCCCAGCGCGAAGTGTGGATCTCCGAACGT 405005 30 93.3 31 ............................AC CGGCAGCGCGTTCAGCACGTGCTCCAGCAGG 404944 30 96.7 31 .............................A GCTCCAGTTGCTCGATCGCCCGGTCTTTGGT 404883 30 100.0 31 .............................. GACAGCTCACGGGAAGCGGGGAACGGAACCA 404822 30 100.0 31 .............................. TCGTCCTCATGCAGTACGCCGGACGCCCACG 404761 30 96.7 31 .............................T CGTTCTCGGCGTCGGTGGCCTCACCCCACGG 404700 30 96.7 31 .............................C ACCACGGTGTCCCTGCCGGATCTCGGAGTCC 404639 30 100.0 31 .............................. ACAGGGCGGCGGCCAGGTGCAGCAGTCCGCC 404578 30 100.0 31 .............................. ACAGGGCGGCGGCCAGGTGCAGCAGTCCGCC 404517 30 96.7 31 .............................C GACTCCATCCACTTCTCCAACCTGGCCTGAG 404456 30 96.7 31 ......................C....... TGTACCAGCCATCGCGAGGCGCCTGGCGGCC 404395 30 100.0 31 .............................. TGGCCGTCCGGGTCGACACTGCTGCCGCGCG 404334 30 93.3 31 ..........A..................T TGCGGGACTCCAGCTCGACACCGAGCGCCCA 404273 30 96.7 31 .............................A TCTCACGGGCCGCCGCCTGGCCGTCGACATG 404212 30 96.7 31 .............................T GCTCGACCCGGGCCCATCCGGCGTTGTACCC 404151 30 100.0 31 .............................. TCGACCCCAGCACGAACTCCCCCGGATGCAG 404090 30 96.7 31 .............................A GCTCACCACCTGGGTCCCCGGCGACGCCTCC 404029 30 93.3 31 ................T............C TTCCCTACGCCGTCGGCTACATGGACCGCGT 403968 30 90.0 0 ................T.....C......T | ========== ====== ====== ====== ============================== ==================================== ================== 21 30 96.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGAACTCCTCGACAGCGGACGCAACTACGGAGACGAGCCGATCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCGGGCCTGCGCGGGTTCCTCACCCGCTGGCTCCTCGAAATCTCTCCAGGCGTCTTCCTCGGCTCACCCTCCGCCCGCGTCCGCGACATCCTCTGGGACGAAGTCCGCACCTACTCCGGCCAAGGACGCGCCCTGCTCGCCTACCACACCGACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCTCTCCCCCGACGACAACCCGCCCGACAAACGAGCCACCCCGCCAGGGATGGAGCAAAGCAGCGAAGCGACGAAGGTTCGGACGGTGACAATGAGTAAGAACCCGAAGCCCGTTATTACCCATTCGTCCCTCGCTCGGAAAGTGAGCAAAAACCGGTCCTCCTGGCGATAAAGGCCCAGGTCGGCTCCT # Right flank : TGCCACCCAATAGGAAAAAGACGCTGCCCAACTGGTCCCTGCCCGGGGGGCCCGCGTCCAGCTCCAACCGCACCTCCTCCAAGCAGCGGTTCCCCTGGGCTCCCTCGCCGGTGGTGCCGTCGCCGACGCGTTCGGCCTGCGCGCCCCACTGTGTCTGTCCGCGCCCGCCCTGACCGTCGTCACGATCACCCGCGCCGCGCTCACCCACACCGGCTCCCCCGGTGAAGCCGCCCAGCAGGACAGGGGGCCGAGCCGCAGTGATCGCAATCTCCGAGGACCTCCGGCGGATCTGTCTTACGCCGCCGGTCTCCGTGCGACCGAGCATCTCAAGGTCGTCCCTCGTGACGACTCTCCCTGGGCCAGGTCGACGCCGGGATCTTGGTCCTCACGGATCAGGTCACCTTTAGTACTGCAACGGTGTTTGCTGTGACTGGTGGCCAGGTCAGGGGATGTGTCCGCGTCGTTTGTAGTGACTGAGCCGAGCCTGGTACTGCCGTCTC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75753-72484 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000013.1 Streptomyces daghestanicus strain NBRC 12762 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 75752 29 86.2 34 ..GG..........T......A....... ACACCTGGCCCCGCGCCACCACGACGACACCCCC 75689 29 86.2 33 ..GG..........T.............T TCGGGCTGGCCTGGCCGGAGCCCAGACGCCTCG 75627 29 82.8 32 ..TG........TT...........T... TCCCACCCACGGGCGTCGATGGGACGTCCCAT 75566 29 89.7 32 .C.G..........T.............. GTCGTCGTCGTCCACGCGGACCTCGGCCGGGT 75505 29 93.1 32 ......................GC..... CTGGCCGGAACCGACCTCGAAACCGTCGCCCA 75444 29 82.8 35 ...G..........T........T.T..C CGGTCAACGTCAGCGTCGCTACCCAGGATGTCGTC 75380 28 93.1 32 .....................-......C GGCATTGGGCTTCTGCCGGCGAACGTACTGGG G [75377] 75319 29 82.8 106 ...G.G...........A...C.....T. GCGGCATTGCCAGGGCGCAGCCGCCCCACCAGGCTGTTCTCAACTCGCGGCAGGCCGAACGAGGTGGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGA 75184 29 86.2 32 ...G.............A.........TC CGAGGCGTGCCCGCGGGACGACCGGTCGTCCT 75123 29 93.1 32 ...G........................C ACGGCCTGATCGACCGGTACATGGCCCTGTAC 75062 29 86.2 32 ...G..........T........T.T... ATGCGCGTCCTCCGGATCGCCGGGGACACCAC 75001 29 86.2 32 ...G..........T........C....C CGCACGGGCGGCGTCGGCCCGGCGGACAGCGG C [74990] 74939 29 89.7 32 ...G...................T....C CGGCGGTACGGCGGAGCTGCACGACCGACCGA 74878 29 79.3 32 ...G......T..T..........T.C.T GGAGCGGCTCGTCGCGTTTAGGAACGCAGCGC 74817 29 82.8 88 ...G....T...T.T.............C AGCGCCGTCGTCTACCGGTGCGTGGCTGCGATGTCGTCCTCACGTTTGGGGGCTCGCCGTATGAGCTGCTCCCCGGCGGGCCGGTCAG T,A [74795,74800] 74698 29 75.9 117 .A.GGG....T......A.A......... GAGACTTCGCCGACATCGGCCGGCTGTCGTCCCGCCAGGCTGCTCCCCCCTCACAGCAGGCCGAACGAGGTGAAGGAAAACAGGTACCGTCGCGTGCATCGCTGCAGGTCAAGAAGT 74552 29 86.2 32 ...G..........T........T.T... GCGGAGTTCACCCCTGGGACCAGATGCACATC 74491 29 86.2 32 ...G..........T........T.T... GTGCTGTCCGCGTCGATCGAGGCGTGCATCAA 74430 29 82.8 32 ...G..........T........T.T..C CGCAGAGGCGGCATTCCATGAGCCAGGGCTGG 74369 29 82.8 32 ...G..........T........T.T..C CAGGAACTCCCACATGCGGTCGCCACGGAGGG 74308 29 93.1 32 ...G........................T GCCTGACCACGCCGCCTACGTCGACCAGCTCG 74247 29 86.2 36 ...G....T...G...............T GTGGCGATCCTCCGCTGTACCCATCCGGCCTCCTCC 74182 29 100.0 36 ............................. AACGAACGAACGGCGCTGGAACATCACCTATTGGGC 74117 28 82.8 32 ...........A..G...T..T.-..... TGGACCGGGCGCAGCATCGGCAGCCTCCGGGG 74057 28 79.3 31 ..GG.A........T......-...T... AGCACGCGGAGCGGGAGCGGATCAAAGCGAA 73998 29 79.3 32 A..G....T.A...........G.....C GAGTGCCCCGTGCCGGCCGGAGAGCGGGTTCC GA,A [73977,73981] 73934 29 86.2 89 ...T..........T........T....C ACGTCGTCGCCCAGCTCGCGCAGGAGCTTGGCTCGTCCCCGCGCCGGGGGTTGCTCCGAGGGCGACGTCCCCACCCAGACCATGGACGT 73816 29 86.2 32 ...G..........T........T....T CCGCGGCGGGCGGACTGCTTGCGGTCGGTGCC 73755 27 82.8 212 ...G.........T.......-...-..C GCAGCCGGTTGAAGTCGCCAACGGTGGCGCGGTTGGCCAGCTCGGGTCTGGTGAGGCGGCCGGAGGCGGTGCCGCAGATGCCGGCCGGCCGGATCACCGGCCGACTGGCGGAAGCCGGGGGTGAGGCGCTGGTCGACCAGCCGTTTCCGTGGCTGATCCGGCATGGTCTGGTCAGCGCCACCGTGCGCTCGGCGTCGAAGGCGGCGGCTGTT 73516 29 79.3 35 ...G..TG....T.T..........T... ACGATGTCCTCCCGGACCTCGGCGAGGCCGCCGTC 73452 29 79.3 178 C..........A....AT.....G....C CGCACGTCGTGCTGCACCAGGGCCAGGCCGGAGCCGGACGCCTCGGTCGTCTCCGGCTAAGGAGGTAACTCCGAGATCGGCCGGCTGTCGTCCCACCGAGCTGCTCGCAACTCACGCCAGGCCAAACGAGGTGAAGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGT A [73431] 73244 29 96.6 32 ............................C TGACTCCCCGGATGTTGCGGGAGCGAGCGGAG 73183 29 96.6 32 ............................C GCGGACCGGTGTCCCCGAAACGCCGCGCCATG 73122 29 100.0 32 ............................. CCCCCGCCCGACTCCCGGGCGGGGGTTTTCTG 73061 29 100.0 32 ............................. CTGATCTCGGCTTCGGCCGCGCTGATCGCCGC 73000 29 100.0 32 ............................. GCTCGCGGCTGTGCTTGCCGTCCACCCCTCGG 72939 29 100.0 32 ............................. GCTCGCGGCTGTGCTTGCCGTCCACCCCTCGG 72878 29 96.6 32 ............................T CGTGCTTCACACCCTCTGCTTCACAGTGTCCG 72817 29 93.1 32 ..........G.................C CTCATGCGGCGGTACTTGACCCCGCGGGAACT 72756 29 100.0 33 ............................. GCGGCTCCGGCCCCGGCCCCGGTCCTGGCCGGG 72694 29 93.1 32 .......................T.T... ATCAGCCGGAAGGCCCACCCGGCTCTGCTGCT 72633 29 82.8 32 ...G..........T........T.T..C CTCATCCGCGCCCTCGAACGCGGCGCCTGGAT 72572 29 89.7 32 ...G..........T.............C CCTTCGGCTCAACGGCCGTGTCACCGTTGATA 72511 28 79.3 0 A..G.................A.G.-..C | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 44 29 88.1 46 GTCCTCCCCGCGCCCGCGGGGGTAGCTCG # Left flank : GAGTGCCAGGGGGTCGTCCCCGCGCCCGCGGGGTTGGTCCGACCGAGCTCGCCCGCTTCTTCGTTCAGCTCACGTCGTCCCCGCGCCCGCGGGGTTGGTCCTCGGCCCGCCTCGCGCGCGCACGCGTAGAGGCCGTCGTCCCCGCGCCCGCGGAGTTGGTCCCCCGTGGTACCTGCGCTGCGAACTGTGCGGATGGTCGTCCCCGCGCCCGCGGGGATGGTCCCACGGCGGCGATGGCGGACCGGGACTTGACCGGCTGCTCTCCGCGCACGCTGGGAGGGTCCCAGGCCGTAGGCCCGCGCGGCATACTCCGCGAACTGCTCCCCGTGTACGCGGGGATGGTCCCTCCCGCTCGGGCGCCTCGATCCAGCCCTGATCCTGCTCCCCGCGTCTGCGGGGAGGACCCTGCCACCGCATGTGTCCTGCGTCGTCGTGGCCCGTGCTCCCCGCGCGCGGGATACGCCTCTGCGCCGTAAGGCTGCGGTCCGGCTGGTGCGGAA # Right flank : CGCCGCATCCCCTGCCCCGCTCTCCGTGGTGTGCTGCTCCCCGCGTCCGCAGGGAGGACCCTGCCACCGCATGTGTCCTGCGTCGTCGTAGCCCGTGATCCCCGCGCGCGGGATACGCCTCTGCGCCGTGAGGCTGCGGTTCGGCTGGTGCGGAAGTCGCTGTATCGACCGCCAGTCCTACTGTCGATTGTGTGCTGAGCGGGGCACGGCTCGTACGGCCTAACGCGGCAGGAGCCCGGCCGTTGTGCTGGCATGGGGGGTGGCCTGTGCTTCTTAAGCTGGTCTTGTGGGTATCTGATCTGTGAGTTTCACTCGGTCGGATGTTGCCCTGGCCTGGTGGCTAACCGGTTGTCAGTGGCAGCTGCTTGACTGGCAGCCGGAAACGAATTGGGGGTTCGCTATGACGACGGTGATTCACAAGACGCCGGAGCAGTTACGGGAGCAGCGGGACAGGTTGCTGGCTGAAACGGGCATGTCCTATGAGCAGCTTCGTGACCGGG # Questionable array : NO Score: 3.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-1.19, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [26-60] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81006-78607 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000013.1 Streptomyces daghestanicus strain NBRC 12762 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 81005 29 89.7 31 .....................G.A....T GTTCTACGTCGTGCTCGGGGTGGCCGTGCTG C [80980] 80944 29 89.7 31 .....................G.A...G. CTCCGCCTCCCCCGTTCAGGTACTTCATCGG C [80918] 80883 29 89.7 31 .....................G.A....A AGCCCGCTGGCGGCCGCGCCGCCGTCGGTGG C [80858] 80822 29 89.7 31 .....................G.A....T CCGTCACGCTCGGCGGCTCCGTGCTGTACCC C [80797] 80761 29 93.1 31 .....................G.A..... CGCCGACGCCGGGCAAGCGAACGGACCTTCC C [80736] 80700 29 89.7 31 .....................G.A....G GTCGACGGCTCGGTGCCGACCCCGGCGGACA C [80675] 80639 29 86.2 31 .....................G.A...GT TCGGGGTCCCCGGCTCGATGTGGAGCAGCGG C [80613] 80578 29 93.1 31 .....................G.A..... GGCGCGCCCTGGAGATCTTCGCGCACTGCAC C [80553] 80517 29 89.7 32 .....................G.A...A. GCGGCGGTCTACTTCTTCATCTTCGGCCTGCT C [80491] 80455 29 93.1 31 .....................G.A..... CGGAGGCGCTCCTGTGAGTGACGCCGAGATC C [80430] 80394 29 93.1 31 .....................G.A..... CGACCGGGCCGCGCTGCGGCACGCTCCCCGC C [80369] 80333 29 89.7 31 .....................G.A...G. GGTTCAGTACGCCGAGCCACTCCGTGGAGGA C [80307] 80272 29 89.7 31 .....................G.A....T AGAGACCGCCCGCGCCTGGGGGGTGCCCCGG C [80247] 80211 29 89.7 31 .....................G.A....G GGCAGCTCACCTTCTCCCGGTTCGGTGTCCC C [80186] 80150 29 89.7 31 .....................G.A....G TCGCCCGCGCCCGCCGTCAGCTCCTGCGCGG C [80125] 80089 29 89.7 31 .....................G.A....G GTCGTACACGGTGTCCGCCGTGCGGGAGCCT C [80064] 80028 29 93.1 40 .....................G.A..... TCGCCGTCGCCGTCGTCCTGCTCGCCGCCGGTTCGTCCTC C [80003] 79958 29 75.9 31 ......T.....T....A....A.C..GT GGACCAGGCCGACCTTCCGGCAGCGCTGCGC A [79939] 79897 29 86.2 31 ...C.T........T.........C.... GGCGGTACGGCGGAGCTGCCCGACCGACCGA GG [79875] 79835 29 75.9 32 ..G.......T..T.......G..CC..T GGAGCGGCTCGTCGCGTACGGGAACGCAGCGG 79774 29 75.9 30 .C..........T.T..A....A.C..T. GTCACGGTCGTGCTTCCGCTTGCCGTTCCA 79715 29 72.4 135 .....T..T...T.........G.C.TGA GGCCGCGCCCGCAGAGGTAGCTCGGAGACTTCACCGGCATCGGTCGGCTGTCCCACCGGGCTGCCGACATACAGCAGGCCGAACGAGGTGAAGGAAAACAGGTACCCTCGCACGCATCGCTGCAGCTCAAGAAGT T [79697] 79550 29 100.0 32 ............................. CCTGCTTCGGTCGGCCCGCGTCAGCCAGGCGC 79489 29 96.6 32 ............................G CGTGGACAGCTGCCCGCAGGGGCTGCTGAGCT 79428 29 96.6 32 ............................A TCACGTGCTGCCACACACCCGTCCAGTCGCCC 79367 29 96.6 32 ............................G GACTCGGGGGTCTTCACGGCGAGGACCTGGTT 79306 29 100.0 32 ............................. CCGCGGTTCCACTCCCTGTTCTGCGGCGGCCA 79245 29 100.0 32 ............................. AGAACGAGCCCCGGCCGGGCTTCCACACACCG 79184 29 96.6 32 ............................G CCTCGCCGCCGCGAGTTCACGATCGGGGAGGG 79123 29 93.1 32 ...................A........T GGTGGGAGTCGAGGCCGAGGTACTCGCCGGCC 79062 29 96.6 32 ............................G TGGATGCCGCCGTGGAGGGTGCCGCTGGTCCA 79001 29 100.0 32 ............................. CGCCCACAGAGGCCGTAGGCGCCCGTCTGAGC 78940 29 100.0 32 ............................. CGGGTCGCGCAGTTGCTCGGCGAGGACCTCGC 78879 29 96.6 32 ............................T GGCCGCAGCACCTTCGCCGTCTGCCGCCGCCA 78818 29 100.0 32 ............................. TTGGCTTCCTCTACCCCCGGCCCGAGCGGCAC 78757 29 100.0 32 ............................. GTCCAGTGGCACCAGTCGCCCGACCCGGAGGT 78696 29 96.6 32 ............................A CTGCACGACTGGCTCTCGCACCCGTAGCCACG 78635 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 38 29 91.9 35 GTCGTCCCCGCGCCCGCGGGGTTGGTCCC # Left flank : GCTGACCCCGACCGGGCGGCTTCGCCTGGCCCAGTACCGGGCGTGACGGTCCGCCCGATCCTCGCGTCCTCCCCGCGCCCGCAGGGCAGCTCCCGGCTCGTGCTCCTGTACGGCGTCGCCCTGGTCACCTCCCCGCGCTTGCGGGGGTGGCTCGGAGCCGGGGGAAGTCGTCATCGGTGGCGCGGTTTGCCAGCTCGGGTCTGGTGATGCCGCCGGAGGCGGTGCCGCAGATGCTGGCCGACCGGCTCACCGAACGGCTGGCGGAAACCAGGGGTGACGCGCTGGTCGACCAGCCGTTTCCGTGGCTGACCCGGCGCGGTCTGGTCCAGCGCCACCGTACGCTCGACATCGAGGGCGGCGTCGAGGTCGTCCCCGCGTCTGCGGAGGCAACTCCGACATCGGCCGACTGTCGTCCCACCGGGCTGCTCGCAACTCCCGGCTTGCAGAACGAGGTGAAGGAAAACAGGTACCCTCGCGTGCATCACCGCAGGTGAAGAAGT # Right flank : GCGAGGAGCTTGGCGAGGTGGGTGCGGCTCGTTTCGAGGGACGGGCTGACCTGGGGAGACGTTGATTGGCGTCCAGGTGGGCAGGTCTTCTCCCTGAGGGGAGGAGGTGGTGTCGGTGGGCTCGTTGTTCGAGGCGATCGAGGCCGAGGAGGCGGAGGTCCGGGGCCGGGTGGAACAACTCAAGGCCCAGCTGGCCGAGTTGACCGAGCGGCTGGAGGCTGAGCAGGAGAGGCTGTCACGGCTGGTGATCACCCGTGAGACGGCAGGGGAACTCCTGGCGAGGATGAGCGACGGCAGCGCTGCGGACGAGACGCCGCCGACGGCGGCGGCGGCGGACGTATCGCCGTTCGCCGGGGCCGAGCGCCAGGTCGTGGGGGTGCTGTCGGTGCCGAAGTGGCAGCCGGGCATGGCCGCGACTGTGCTGCCGCGGGTCTACCAGGACATTCTCGAGGTCGTCGATGATGCGCCGGGGCCGGTGCGGGCCAAGCAGATCGTGCCCA # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGTTGGTCCC # Alternate repeat : GTCGTCCCCGCGCCCGCGGGGGTAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 93592-90629 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000013.1 Streptomyces daghestanicus strain NBRC 12762 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 93591 27 75.0 33 .C...TG...T.T........-.....T GAGCGCCGTCGCGTACCGGTGCGTGGCCGCGAT 93531 28 85.7 79 .......T......G.A.....G..... GCCGTACGAGTTGCATGCCTGACAGGCCGGCCAGGACGTGCCCGCGCGCGGACTGACTTCCCGCCGCCCTGATCGGGAC A,G,TT [93510,93516,93518] 93420 28 89.3 32 .......T..A...A............. TCCGGGCCCGTCGCCAACATCGTCACTGCGGC TGA,C,G [93397,93401,93408] 93355 28 71.4 109 .C...T..T..C.......A..C.AT.. CGACGGCGGCCGGCTGTTGTCCCACCGGGCTGCTCGCAACTCCCGGTTTGCCGAACGAGGTGAAGGAAAACAGGTACCCTCGCGTGCATCACCGCAGCTCAAGAAGTGT 93218 28 92.9 33 ..............C...........C. TGGAGAAGCTCGCCTCCGGCGATGTCATCAAGT 93157 28 92.9 33 ..............C...........G. GATGTTGCCCGAGGAGCTGACCAGGCCGGCGGT 93096 28 92.9 33 ..............C......A...... CGCCGCGCCAGCACCAACCCGGAAGCGCTCGCG 93035 28 96.4 33 ..............C............. CGTGGGCGCCCCGACGAGGGCCTCGGTCGTGAT 92974 28 92.9 33 ............T.C............. CCCGACGATGACCAGTGAGCCCCGGCCCTGGCT 92913 28 96.4 33 ..............C............. GGCCCCGCGCCGCCAGCCCAGCCCCTGGGCACG 92852 28 96.4 33 ..............C............. CATGGCGGCTGAGCTTGCCCTAGACAGCATTGA 92791 28 100.0 33 ............................ CACGCGGGCGTCCTGCCCGAAGACCACCAGTTC 92730 28 100.0 33 ............................ CTGGTACTCGTAGAGCTGCATGCCGGTGAGCCC 92669 28 89.3 33 .....TT.......C............. GCGCTCGGCACCCACGACGGCCTCTTCGGCGTC 92608 28 92.9 33 ..............C..A.......... CCGCCAGATGTTCGCGGGCACGACGTGCACCGC 92547 28 100.0 32 ............................ CCTCGCCTCGCCGTCGTCCTGCTCGCCGCCGA 92487 28 78.6 157 ...AG.......TT.......C.C.... CCCGACCATGTTGGAGCGCGTCTCCGATGCCACGTCGTCCGCACGACTTCGCCGACATCAGCCGGCTGTCGTCTCACCGAGTTGCTCGCAACTCACGGCAGGCCAAACGAGGTGAAGGAAACCAGGTGACCTCGCACGCATCGCCGCAGGTCAAGAA 92302 28 92.9 33 T......................T.... GGGCTCTAGCGTCGATCTCGTGTCGCCCGGCAC 92241 28 85.7 33 ..............C..A....CT.... CGCACCGGACACGTCACACCGGCCGCCCGGCAG 92180 28 89.3 33 ........T.....C........T.... CTCGCCGTTGTCGTGCGCGCCGCCGTCGTGGCC 92119 27 89.3 33 ..............C......-...T.. CCCGGCCGGCGGCGGCGCCTCGCTGACCTACGG 92059 28 78.6 33 A.......T.G...C..A.....C.... CCGCACGGGCGGCGTCGGCCCGGCGGACAGCGG 91998 28 96.4 33 ..............C............. CCGGCGGTACGGCGGAGCTGCACGACCGACCGA 91937 28 75.0 33 .C.A......T..TC.........T.C. TGGAGCGGCTCGTCGCGTCCAGGAACGCAGCGC 91876 28 89.3 89 ........T...T....A.......... CAGTGTCGTCGCCTACCGGTGCGTGGCTGCGATGTCGTCCTCACGTTTGGGGGCTCGCCGTATGAGCTGCTCCCCGGCGGGCCCGTCAG 91759 28 85.7 110 ....C.........C..A.A........ GGAGACTTCGCCGACAACGGCCGGCTGCCCCCAGGCCGCCAACTCACAGCAGGGTGGAGGAGGCGAAAGAAAATAGGTACCGTCGCGTGCATCACCGCAGCTCAAGAAGT 91621 28 100.0 33 ............................ TCGGCAGTCGATCGGCAGCCGATCAGCGACCAC 91560 28 100.0 33 ............................ TGACCCCGCGAGCCCGACGAGATGGGGCGGTCC 91499 28 100.0 33 ............................ TCATCCTCGGCATCGAGGCGTCCCTGCTGATCC 91438 28 100.0 33 ............................ CTCGCCCAGCGCCGCCGAGACGGTGGCCGGGTC 91377 28 100.0 33 ............................ GCGCTCGACACCACCACCCCCGGCGGCCGGCTC 91316 28 96.4 33 .......................T.... CCCCGGACTCGTCTACCGCTGGGGCGACATGCC 91255 28 96.4 33 .......................T.... CGGGTCGGCCACGTCGGGCGGCATCGTCGACGC 91194 28 96.4 33 .......................T.... GTAGCCACCACCACCGACCACGAGGAGCAGACC 91133 28 96.4 33 .......................T.... CATGGTCCTGATGACCATCGGAGCCTTCGCCGC 91072 28 96.4 82 .......................T.... CGCGCCCTTTGATTGGGCTGTGATTGACCGGCAGTTGCGGGGGTTGCTCGATGCCACGGGGCGGCGTCCTCTCTGTGGGCGC 90962 28 96.4 33 .......................T.... CCTGCTCACCCGGTTCTCGCTGAGGGTGGCGGG 90901 28 92.9 33 ..............C.....A....... GGAGGCGCCCGCGGTTGAGGTTCCGGCCCAGCC 90840 28 89.3 33 C......T...............T.... CACGGTCCAGCCGGTGTGTGCGGCCGAGACGTG 90779 28 89.3 33 .............TC..A.......... CATGTCGTAGATCGGTGCGGTGTAGTCGCTGCG 90718 28 92.9 33 .............T..A........... CGACTCCCGGGCCGTGCGCCAGACCGCCAGGTC 90657 28 78.6 0 ................GC.T.C..C.C. | A [90643] ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 42 28 91.6 43 GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Left flank : ACCACCGTGTGCGCCATGCTCCTGCAGACCGTCGACCGCGGAGACAACCTCCCCCTCGCCGACCAACTTCAGCAGTGGGCCTCCGAACTGCGCTTTCGCTCCAGCCAGTGACTCGGAAGTCGGGATATAGACGGCCTTCACGGCTGTTTGCGCGTCAGCGCCTGCTCCTCGGGTTTCTGAGCGGTGAGGGACACGGTGGTCTCCATTGGCGGGGGCGGAGGGCGTGGCCACTGGGCACCTGGTCGAGCACCCCTCGACGGCGACCCCGGCGTGGACGCCGTCGTCGTCTCTGCGCTCACGGGGGCGAGGGCGGGGGTAGCTCTGTAGACGGCTTGCCCGTCACCGACGACCACGAGTTGTCCCCGTGCCTGCGGCCGCCGCCAGCGGCCAGGCCTCACGAGGTAGCTCGACGGTGGTCTGCGCCTGTTCACCGCACCAGCGGTGGTTTCCGCGCCCGCGGTACGGGTTCTAGGCTTCCAGGTTCGCAGGACAGGGAGGCC # Right flank : ACGTTCGGCAAAGCGGCAGGTGGCTCCGACGGAGGCTCCTCACCCCGCCGGTCCGCCGCCAAGCCGTTCTCCGCACGCAGAGCGGTCAGCCACGGCCACAGATCCGGCAGAGCCTGCCGTGGGCAACCCAGACGGTGCTCGATCCGGCACTGCTGATCCCGCGCTGCCGGGAACGTCCCGTACACCGTCACCCGGCCATCCGACAGCTCAATCCACCGATGCTCCGCCGGCACCAGGTGCGCCAGCACCCGCACCCTCGGCTCCAGCAGCACCCAGTCGCCGTCCAGCGTCACCGCCCGATCCTGCGGCAGCCCGCAATACGGGCATGCCGACTGGCCAGTGCCGATCCGTCGCGGCCGCTCCTCGATAAGCCCCATACCGCGAGCCTGCGGGTGTATGCCAGCCGCCAGTAGGACGCAAACCAGACGGGACCGGAGAGAAAGCCGCGCCGAGCGAGGGCAGGCCCGTCACGAAAGGCGGTTGCCTTTGCAGAAACCGCA # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 101284-99062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000013.1 Streptomyces daghestanicus strain NBRC 12762 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================== ================== 101283 29 100.0 32 ............................. AGCCTCTCCAGGGCCGAGCAGCGGCGGGTCTT 101222 29 100.0 32 ............................. CGCTACCGGTCGCCGGGGGCGTCCGGGTGGAC 101161 29 100.0 32 ............................. CGGAGCACTGGAGGGAGTGACCGCATGGCTGG 101100 29 96.6 32 ............................G CCCCACGGCGCCGAGATCGGCCCTTACCCCAC 101039 29 100.0 32 ............................. TCCCCCAGGGCGGCGCTGACGGTGGCCGGGTC 100978 29 100.0 32 ............................. CTGACTCAAGAGCAGCTCGGCGAGCGCATCGG 100917 27 89.7 32 .................--.........G TGATCGAGATCGTGACCAGCAGCGACTTCTAC 100858 29 96.6 32 ............................G GACCTGCGCGGGCTCGCCCGGCACGGCCTCCT 100797 29 93.1 32 .C..........................G GGTGTGCTCCTCACCCACTGGGCGCACCGGTC 100736 29 100.0 32 ............................. GGCCCATCAGCGTTGCCTGCCCGTGCGGCAGC 100675 29 96.6 32 ..............T.............. TGGACCGACGGCGTGCACGCCTCGTGTCCACG 100614 29 93.1 32 ..............T.......C...... CGGTACCACGAGCGGACCTCGGCGCCCGGCTG 100553 29 89.7 32 ...T.............A.......T... TTCGCACCTTCGGTGAGAAGCGCAACCCGCTG 100492 29 100.0 32 ............................. GTCACCGACGACACCGCAGCGATCCAGGCCGC 100430 29 82.8 32 .....T.........C...T...G....G ACATGGTGGACGTCGCTGGCCGTCACCTGCTG 100369 29 86.2 32 .....T........T......C.T..... CCGACCGTGTTGAAGCGCGTCTCCGTCGCCGA 100308 29 89.7 32 .....G........T.............G GTGCGCGGGCCTTCCGTGTCCACCAGCTCGTA 100247 29 82.8 32 ..T..............A....AT.G... CTGGCGCAGATCGGCGGGCCGTTGTCCGCGAC 100187 29 72.4 30 .CT......C...TT....A.....G..G TTCGTTCCGCGCCCCACACGTCGTCATCGA C [100183] 100127 29 86.2 33 ........G.....TA...........T. CGGTCCAGGTCTCCATCCAGGTCCGGGAGGACG 100066 29 72.4 11 ......T.T..AG..A......AT.G... CCCGACGGCAT Deletion [100027] 100027 29 86.2 32 A.GT......................C.. CCGATGACCTCAGCTGACCCCTCGTCCTCGTC 99967 29 93.1 32 ........T.....A.............. CGCACGTCGTGCTGCACCAGCAGCTGACTGGA 99907 29 86.2 32 A..........A.........A......G CACGCCTACCACGTCGCGGTGTGCAACGCGCC 99846 29 82.8 211 ...A.........T..T.........C.G CAGCCGGTTGAAGTCGCTAACGCTGGCGCGGTTGGCCAGCTCGGGTCTGGTGAGGCGGCCGGAGGCGGTGCCGCAGATGCTGGCCGGCCGGATCACCGGCCGACTGGCGGAAGCCGGGGGTGAGGCGCTGGTCGACCAGCCGTTTCCGTGGCTGATCCGGCATGGTCTGGTCAGCGCCACCGTGCGCTCGGCGTCGAAGGCGGCGGCTGTT 99606 29 79.3 35 ......TG....T.T..........T..G ACGATGTCCTCCCGGACCTCGGCGAGGCCGCCGTC 99542 29 79.3 178 C..C.......A....AT.....G..... CGCACGTCGTGCTGCACCAGGGCCAGGCCGGAGCCGGACGCCTCGGTCGTCTCCGGCTAAGGAGGTAACTCCGAGATCGGCCGGCTGTCGTCCCACCGAGCTGCTCGCAACTCACGGCAGGCCAAACGAGGTGAAGGAAGACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGT 99334 29 93.1 32 ...C........................G CCGAACCCGAACTCGGGCCAGCGCAGCCACAG 99273 29 96.6 32 ...C......................... AGGTTCTTCTACGGCACCCAGTCGGGCGGGAC 99212 29 96.6 32 ...C......................... ATGACCGTCATCGTGTCCGGCGGGTTCTGCTT 99151 29 93.1 32 ...C..........T.............. TCCACGTCTGGCAAGTCGTCATCGGCCAGGGC 99090 29 72.4 0 ...C.......C........AC.GC..TG | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================================== ================== 32 29 90.2 42 GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : CATCCATCGACTGGAACGCCGGGCACGCCTTCCCGCAATCATGAATGCCGCACACCCACATGAACCACAACCGCCCCCGGCCACCGCTGACCTCATCCAGCCGCCGCCGGAACGCCACCGACACGTACCGGTCCCACATCATCCCCGCCACAGCCGCCGTATCCAGCAGATGCCCCAGCAGCAGATGCCTCCGCCCACCGTTACGCGCCGCCGACTTCCCCCACAACACCGACACCCGCGTGACGACCTCATCGGCCAACCCCATCGACCGCATCAACTCGACGACCGACCGCTCGTCCTCCACAACCGCCCCCCGCTCCACAGCGCACTTTGCGCGGCACTGTAAACGGACCCACTGACAACGAGCCCGAGACCCAGGCACCGCAGGACGCAGCCCACCCGCCGGCCGACGCCCCACCGGGCTGCTCGCAACTCCCGGTTTGTCGAACGAGGTGAAGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGT # Right flank : ATCCTGGCGAGTCCGCGACGGGTCCGTTGGGCCCATCCGGTCCGCCGGGCATCGCGGGCGCGCGGGGCGCTGACGGTGCGGCAGGCGAGCCGGGATTTGCCGGTGCGTCCGGTGCGCCGGACGCACCGGCGAACCAGAGGCGGGCTCCGCTGGTGAGCCTGGTGTGGCGGGGCCACCGGGGTCGCAGGGCGAGCCGGACCCGGCCAAGCCGGAGGGTCCGCAGGGCCCGACGGGTGAGCCGGGGGCGCAAGGAGATCAAGGTCCGGCGGGCCCGGCGTGCCCGGACGGGTACGCGATTCAGCCGCCGGATGATCCCGACGCGCTCGTGTGTCGTCGGGACGGGGCGCCGGCCCCGGAACTGTCGGGTGGCGGAGGCCGTTTCGTGGTGTCCGGATAGGGTCGGCGCATGATTCGCGCAGTCATCTTCGACGTTGGCGAGTGCCTCGTGGACGAGACCCGGGAGTACGGCACCTGGGCCGACTGGCTCGGCGTTCCCCGTC # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-1.02, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 111860-112856 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDX01000013.1 Streptomyces daghestanicus strain NBRC 12762 sequence13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================== ================== 111860 29 96.6 32 ............................C GGCTTCAGCAGGTAGTACCCCGACTTCCACGT 111921 29 96.6 32 ............................C GGGGAGCGGTTGGCCGTCTCCCCCGGCACTTC 111982 29 100.0 32 ............................. TCGTGGGACCTCGCGCGCCGGGTCGGGGTCGG 112043 29 100.0 27 ............................. ATCGTCGGCGGCCAGCCAGACGATGAG 112099 29 100.0 32 ............................. CCTGCCGCCCGGGACGACCGGGGGATGTTCTG 112160 29 100.0 32 ............................. CGCGGGCGGCGTCTTCGGCGGCCTGGGCCAGG 112221 29 100.0 29 ............................. ATGGCGGCGGCGGCCGAGGAGGGCGAGCC 112279 29 100.0 32 ............................. TCGGCGGCGGGGGCCGGGTACTGGAGGCTGTA 112340 29 96.6 29 ............................C ATGGCGGTGCACGTGCTGGAGTCCGAGTC 112398 29 86.2 95 .AA....................T.T... CTCGAGCTCGCCGGGAACGGCGCGATCGCGACATCGTCCCCGTCTCCGGAGGGGGGCAGTTCCGGTGCGCGTACAATGAGCAGCGTGAACGGCAG G [112401] 112523 29 86.2 31 ...A...T.........G.......T... GAACTGTCCGACTCCGGCGTGATGTAGCTCG 112583 29 82.8 32 ..............T..G......AT..C GGAGCGGCGACGGCGATGACGCCGAGCAGGGT 112644 29 75.9 32 ....G.T.......T..G.A...C....C TATGTCTGGAGCGCGGAGGTTGTCGTCCCGAA 112705 29 82.8 32 ....C.T........T.G..........C CGAGCGTGGTCGATTTCCGCGCCGCCTTCGAC 112766 29 89.7 32 ....A......A.A............... TCCCTCTTCAGATCGACCGCCGGCTCCGGCCA C [112782] 112828 29 86.2 0 ........T.A.......A....T..... | ========== ====== ====== ====== ============================= =============================================================================================== ================== 16 29 92.5 35 GTCGTCCCCGCGCCCGCAGGGGTAGCTCG # Left flank : CCTGCCGGACGAGGACCTCAGCGCGCTGTGGGACGACGGCGACACCATCGTCAGCAGCGGCCGCAACTGGAGCGCCGAACACCACCTCGACATCATCCCGGAACCCCCCGGCCCCGCTTCCGCGGAGACGGCTCCATGAGCGCCGGAACGACCGTGATCGTCCTCATCGCCGCCCCACCCGGCCTCCGGGGCCACCTCACCCGATGGTTCATCGAAGTGGCCCCCGGCGTCTACGTCGGCAACCCCAACCCCCGCATCCGCGACCGGCTGTGGAACGTCCTCGCCGAACGCATACATGACGGCCAAGCCGTCATGATCGAACCAGCGGCTACGGAACAAGGCTGGACGGCCCGCACAGCCGGCCGCGATCGTTGGACCCCCGTCGACTTCGACGGTCTCACCCTCATCGCCCGCCCACGCCAGAACGGACAAGCCTGGCGGCCCTCGACCGACGTAAAGCAAAACGGCATGATCACCTGACAACACCGCAGGTCATGAGT # Right flank : GGTAAATGTGCGCTTAGCGCATGCGCGTGTGCCGTAAGCGAGTACGTAATTGCACAGGTCAGATGGCCTTCGGCAGATCGGGTGAACGAACTTTCCGATAGAAGACCATAGTTGGGGTTGATCCTCTATAGGCTGACCTTCGTGTGGAACCTCCGGTCCCTTCACGTCCCGCGGGCGTGGAGGACGACCGCTCCTCCCGCCCGGAGGAAAGGGAATGCCGGAGAACGAACCGCCGGACTACGGCCGGTGGGCCTTCTACGTCGCTTGCATGGATCTGGCCATCCAGCTCGCAAACTGGCTCACCTGGTAGCCCGGCGCTCGTCACAGGGCCGTTTCCGACGGGGAACGGCCCTCCACGTCAGGCGCTGCTTATGGAAGATGCACCGTCCTGGGGCGACCCCCGCGCTGGTGCGTCCCGAGATGCAATACCTGACGCTGCCAACATACCCATTTGTTCACGGCGCCGCCCAGTGAACCGTCGGGGCAATCCGCGTGGAGAG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCAGGGGTAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //