Array 1 2391-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWR01000026.1 Neisseria weaveri ATCC 51223 NW51223.2_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2390 33 93.9 33 CT............................... TCCCCTTCAACCAACAATACCGGGCGGTCAGGG 2324 33 97.0 33 .A............................... CTTATTCAGATGGCCGCGGAAATTGTAGCTCTC 2258 33 97.0 33 .A............................... ATAGCAGGATATCCCCACCGGCAGGCCCGGCTC 2192 33 93.9 32 CA............................... TGCTCCGTTTTCTTTCAATTTCCTTTGCAAAT 2127 33 97.0 33 G................................ GCGCCCGTCGGATAAACCCAAAGGGCAAGGCCA 2061 33 97.0 36 C................................ GCGGCATTGCTGCACTTGGTGGGTTTCGGTTTGTAT 1992 33 93.9 33 CA............................... GCTTCATTTTCGATTTGACCGACCGCGATGCAA 1926 33 97.0 31 G................................ AAGCAGTCGTTTAATCTTGCTTCTGCGCGCG 1862 33 97.0 32 G................................ ATTGCCGTTTTTATAAAATTTTAAAGGAAGAC 1797 33 93.9 33 TT............................... TAATTACAGCTTATACAATACTTTACTTTACTG 1731 33 93.9 31 TG............................... AATTTATGGAACAAAATTTAATTTAACGCAT 1667 33 93.9 33 TG............................... CATATTTGCAAAGATTGAGATAATTGCATCATT 1601 33 97.0 33 .A............................... CACACTGGTTCACGTTTATGAAGGAAACCGAAA 1535 33 97.0 32 .T............................... AAGCAGCAACTGATGGCCAGCGGCGTGGTCGT 1470 33 100.0 32 ................................. CGTTTGATGAAGTAGTTAACGGCAAGACTACG 1405 33 100.0 34 ................................. CTGAAGAAATCCTAAATAAAATTAAACAAAAGGA 1338 33 93.9 33 GT............................... AACAGCCGCGTTGCCAAACGCCGCCGCGAACTA 1272 33 97.0 33 .A............................... CTTTAAAAATCAAAGAATTATAATTAAATCAAT 1206 33 100.0 32 ................................. AGAATCAGGCCACTGGTATCCGGGCGATGCAA 1141 33 93.9 32 TG............................... AATTTCCGCAGCAGAATCCCGCGCCATTGCCG 1076 33 97.0 32 .T............................... CGCCACATCATCTGCCGACAAGCCTGCCGTAA 1011 33 93.9 32 TA............................... CGCGCTTTCTTCCGCGGCCTGCGCTTTGGTGT 946 33 97.0 31 C................................ CCCACATTCCAATCAGACTTCTAACTTTGCC 882 33 93.9 33 TT............................... ATCATAAGACAAAAGGCATTCGGATATGTTTCA 816 33 100.0 35 ................................. AAGCATACCCATTCATTAATACTTTCCATACCACC 748 33 97.0 33 .G............................... TATCAACTCTTGTCTATGAGTAAGCATCATTAT 682 33 97.0 32 T................................ AATCTTATTTCAGTTGCACATTTCTTGCAGTA 617 33 100.0 34 ................................. TGAAAATTCGTTGTCATGACAGAGTTTGTTATAC 550 33 97.0 32 T................................ AATTTCTTTTTCAGCTAAAATTTTATTAGTTT 485 33 93.9 34 CT............................... ATAGGTGCATCTGAAATATCGTCTCAAACGGCTC 418 33 97.0 33 .G............................... ACATTGTTGACTAAAGTGTAGGGTTATTATGAT 352 33 93.9 36 TA............................... ATTTTGAATCTGGTGCAGACCTTGACCGATTTCGGC 283 33 97.0 32 G................................ TAAATAATTTTCAATAGCTTCTTTTGCTTCTA 218 33 97.0 31 T................................ CTTTTCCATTACTTAGCACGGTAAAGCCATA 154 33 93.9 32 CG............................... AAGCAATGGACAACCTTTGAAAATGTAAAACT 89 33 93.9 0 TT............................... | ========== ====== ====== ====== ================================= ==================================== ================== 36 33 96.2 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAATAAGGGAAAATGGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGGCGCAGATGGGCAGGCGAGGCTGCGGCGCATCGCCAAGCATTGCCTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTGAAACTCAAAGCCAAGCTGCTCGACACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGCAGGATTGTTCTTTAACAATCAGGACATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGG # Right flank : CAACACGTTTTGTTAATTGGGAAAGGGTTAAAGTTATCAGCCGCCTTCGGGCGGCTG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWR01000001.1 Neisseria weaveri ATCC 51223 NW51223.2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 54 33 97.0 33 .T............................... AAACCAGTGCGTTAAGTAAGCGTGAAAAAGCTA 120 33 97.0 37 A................................ AGTAATTTGTAAAGATTTTTTTGCAGATGTTGACTTA 190 33 100.0 32 ................................. TCCGCCGTTGCCTGTATAACCACCCCTTGCTT 255 33 97.0 33 T................................ CTGTGTAAGCGCATAAGCACCTTGAAAAGCAAC 321 33 93.9 0 CT............................... | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 97.0 34 GACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCTGTGTGTTGAAACCGCGCCGGGTATGGTGGGCAGTACGCCTCCGGCAGGG # Right flank : CGTTCTGACTCCAAGTCTTTCACGGCCTTGCGTAGCTGTAACATCGCGCGCGTTTTGTCACCATTTAGCGATTTTTTTGTCACCACCCGACAAACAAACTGGTGACAAAAAATCCGCTAAAACAAACCCCGTTTAAAGATAGGTTAAACGGGGTTTTTAAACGCCTAAAGTTTGTACACCAGATTATCCTCGTATGAGGCATATTTGCTGACCTTAGCCTGCACGGTTAGCCGGGTAGAGTGATCAAATACATGCCAATTATCCAGCTGCATAGACACGACCGCATCAATATAGTCGATAAACTCCGACCGCGTAGAGCTGAAAAACAGATATGGCGGGCGTACAAGATTGACAAGTTTGAGGTAATCAACCAAGCCGAAGCGGCCGTCTTGAGCATAAGCCGCTTGTGTAGTGGATAAATAGGGCGGATCAAGCACCAACAATGCTTGCGGGTCGTCGGAAAACTGCGGAATCAACGTCTCGTAAGACTGCCGCGTTAT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //