Array 1 295170-294937 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLL01000001.1 Campylobacter sp. RM8835 RM8835contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 295169 36 100.0 30 .................................... GAATTGTCTCAAACTGATAATGAATTATCG 295103 36 100.0 32 .................................... AAAGACTGCATAGACTGCATAGACTGCAGTGA 295035 36 97.2 29 .......................G............ GATGAATTTTTGCTTGGAGTAAAACAAGT 294970 34 80.6 0 .......................T--..T....GAT | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 94.4 31 ATTATAACATATAGAAACTAAGGAGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAATTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTAAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAAATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAATGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCATACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACTGATTTTGGAGTAGGGGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGCGACTGACTAAAAATGGTTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTACCTGCAAATTACGAAGC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGAGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 165782-164941 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLL01000002.1 Campylobacter sp. RM8835 RM8835contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 165781 37 100.0 35 ..................................... TTCTAAGAGTTAGAATTTACAAACAAAAATTAAAA 165709 37 100.0 35 ..................................... TCCTTTTCCCAAATGCAATCTATATCTAATTTTTT 165637 37 100.0 34 ..................................... AATATCAACACCATTTTTAGATAGACACAATGAT 165566 37 100.0 39 ..................................... TCAAAAGCCACAGGTGAGTAAAGACTCCCACTACAACCA 165490 37 100.0 35 ..................................... CTATGGGCTGTGAGCCAATCATTATGCCAATAATA 165418 37 100.0 37 ..................................... TTTTACCACTTTAAAGCTATCATTTAAATAAACATTT 165344 37 100.0 37 ..................................... TAAAATTTCTCCAGCATTTAGATATATACCACATTTG 165270 37 100.0 37 ..................................... CGATTTAATTTTGATTTTGTGCTAAACTCTATACCTT 165196 37 100.0 34 ..................................... ATAATCATAGTATGCCCAGATGGTCTATCGCCAA 165125 37 97.3 37 ....................................T ACATTAGAAACATTCCAGCTATTAAGTGGTTGGTTGA T [165104] 165050 37 100.0 35 ..................................... TAATTTATAGGCTCTACAGCGTCGCCCCTGTCTAT T [165026] 164977 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.3 36 ATTACAAACAATATGACCCGATTTAGGGGATTGAAAC # Left flank : ATATAGCAACATCATGCAAATAGATAAGATAAATAAACTATATAAAAGATTAGATAAATTAAGAAACAACCTAGCCCACGCCAACTCAGGCGACTCTATTGCAAATGCTAAATCAAATATCAAAAACCACCAAAATAGCTATAAGCAGCTGATTTTAAAGACTTAAAGCCATCACAAGCTATTTTGTTGGTATATTATATAAGCTCTTTTGTGAATATAGCAATTAAATTTACCTAGAGTTATCATAAATATTTTTCCACTTTTAAAAAAAAGATCTAAATTTATGTGAATTTGTAGAAATTTTCAGCCAAAATTTGGTTATTTATATATAAAATATTGCTTTAATTTGAATTTGCTTATCTTGATTTATATGGTAGATTCAATGTTTTTTAACTTTTTATTTTATATTTTGATTGTGTGAAAATTTCAAAGTGTGGTTTTATGGCTATTTATTGATTTGTATAATTGACTATATAGACTCAAATGATGAATTTTTGTCT # Right flank : TGATAATATTGCAATTCTAAATCAACACAAAGGAGATATTTATGAAAATAGTAAATGGAAAGGTTATACCATTAGACCCTAAGGTTAAAAGACTAATAGATACAAAGGAAAGGTTACACAATAGATACAAGAAACTAACACTTATGTTTGATATGTGTATTAAAGACTGGGAGGGTCTTAACGACCCAGGATTTATAGATGATGAAAATGATGAGGAAGATATAACAGACTTATACTGTTCTATTCGTAATGAACTATTTAGAGTTAGAGAAGAGTTATTAGGAATAGAGAATAAGCTATTAACAAGCCTTAAAGAGCTCTAAAATTACTAAAGAACCCTTAGGCTTATAAGATATACCTAAGGGGTTAAAATTGATTTAAATTACAAACGATATGACCCGATTTAGGGGATTGAAATGGGTTATGTACTATCATCAGATTGATGATATGATTACAAACAATATGACCCGATTTAGGGGATTGAAACTTATATTAATCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAAACAATATGACCCGATTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 179438-180056 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLL01000002.1 Campylobacter sp. RM8835 RM8835contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 179438 37 100.0 35 ..................................... ATATTCTATTTATTTTTTTATATATGCCTATTTTT 179510 37 100.0 34 ..................................... ATACTGTGGCTGGATGGATTTGTAACGTGTCTAA 179581 37 100.0 37 ..................................... TTCATTTGACTTAAAGCATATCTTATTTCCCCATTTG 179655 37 100.0 37 ..................................... TTTCTTAAAGCTAATGATGAACTCTTAAGATGCTTAA 179729 37 100.0 35 ..................................... TTTGATGAGCTAGAGCGAATTAAAGAAAGTTTTGC 179801 37 97.3 38 ..........................T.......... CTATGTTAAACGCTACTCATTATAATATCCAATTTCAA 179876 37 100.0 35 ..................................... CTGTATCTGCAAGGCTCCGCAAGTGCCTAAACCTA 179948 37 100.0 35 ..................................... TTATAAATAAATGCCGATGATGTTGTTGATATAAA 180020 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.4 36 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGCAAACATTTTAATAAGCCATTTTTTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGTTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTTGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAACGCCCATAAAATAGGCTAAATTTGGCTCAG # Right flank : ACAAATCTAAACATCTAATCAAATTTAAATATTATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTACTAAGAAATCGAATAATGCTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGAAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCGCTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATCAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //