Array 1 63322-62334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDQI010000028.1 Pseudomonas aeruginosa strain M0133 NODE_28_length_63665_cov_23.4673_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63321 28 100.0 32 ............................ AGGTGCCGTTGTAGCGGCAGCGCCAGTACAGA 63261 28 100.0 32 ............................ TCAACGGCCTGACGGTCAGCGAGGGGCTGTTG 63201 28 100.0 32 ............................ CTGAATTCCCCCACGCGGTTGCAGAGGGAACC 63141 28 100.0 32 ............................ TGGACCAATCTGGAATGCATTGGCGAAATACA 63081 28 100.0 32 ............................ CAGATCGCAGACGGCACCGGCCCATTCGACGA 63021 28 100.0 32 ............................ TTCAGGCCGGCAAACAGGCTGGCGTCGAGCAC 62961 28 100.0 32 ............................ AGGGCGTCCCCTTCCAATCTGAGCGTCGTCAC 62901 28 100.0 32 ............................ ATTCCGCCCAGCCATATCCCTAGGGCTATCTC 62841 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 62781 28 100.0 32 ............................ GATGACGAAAGAGCCACCGCCGCCCTCCACCG 62721 28 100.0 32 ............................ TCCCATAGACTTGCCGATCTCGGCTGCGGCGC 62661 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 62601 28 100.0 32 ............................ TGCCCGCCATCAGCGAAACCGAACATGCTTGT 62541 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62481 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62421 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62361 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACACTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 343-1690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDQI010000027.1 Pseudomonas aeruginosa strain M0133 NODE_27_length_65144_cov_22.4899_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343 28 100.0 33 ............................ CGGCATCGTCCAGCCACTCGATGCGGGCCTCCC 404 28 100.0 32 ............................ TGGAGGAGATCGATCAGATGGACCTCCTGGAC 464 28 100.0 32 ............................ TCCAGGCGGCAAGGTGCTGGACCCATTCACGG 524 28 100.0 32 ............................ CAACACCTTGGCCATGGCCAGGGCTTTGTCTG 584 28 100.0 32 ............................ TCGGTGACTTCGACGGTGCCTGGTACGTGCCA 644 28 100.0 32 ............................ AGTAGGGCATCGGCTGGTTCCACGCGAGCAAC 704 28 100.0 32 ............................ GGGGTGATGCCGCGCCGCGCTGATCACGAAGA 764 28 100.0 32 ............................ ATGAGCACCTGAAGAACTTCTTCGCCGGGGTG 824 28 100.0 32 ............................ AATGACCCAGGCAAACAACGGAAAGATCACCA 884 28 100.0 32 ............................ GGTGCGTGCGGCGGCGTTCCTCGCTCAGGTCG 944 28 100.0 32 ............................ TTCACGGCGAGGGTCTGGTAGATCGCCTGCCC 1004 28 100.0 31 ............................ CGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1063 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1123 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1183 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1243 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 1303 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 1363 28 100.0 32 ............................ AAGCAGGTGGGCATGTTCACCGCGCCGCAGCC 1423 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1483 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1543 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1603 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1663 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12213-10565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDQI010000027.1 Pseudomonas aeruginosa strain M0133 NODE_27_length_65144_cov_22.4899_ID_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12212 28 100.0 32 ............................ TATCCGGCACAGCCGGCTGGTCGCCCGTGCAG 12152 28 100.0 32 ............................ ACAGCACCCGCCGAAGAAGTCGGGATGTACTC 12092 28 100.0 33 ............................ AGTCCGCGCACGCTGCGCACACCCATCTTGAAT 12031 28 100.0 32 ............................ AAGATATGCATCCGGTTCCGCCGGAAGTCGGG 11971 28 100.0 32 ............................ TGGCGATATGGCCCAGACCCATAAATTGATGC 11911 28 100.0 32 ............................ ATCAATAGGGGCAATCGGGGCGGGAGCTTTGG 11851 28 100.0 32 ............................ TTGGTGAGCGTCACAGGCTGGGTCACAGCCTC 11791 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 11731 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 11671 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 11611 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 11551 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 11491 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 11431 28 100.0 32 ............................ AGTCCGGAAAATGCGCCTAGCTCCGGACTGGT 11371 28 100.0 32 ............................ GAAACAGGCGCTGTGGGCGATGAGTCCAAAGC 11311 28 100.0 32 ............................ TCGTAGGTTTCTTCGTCGTAGCGCGACTTGAT 11251 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 11191 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 11131 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 11071 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 11011 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 10951 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 10890 28 100.0 32 ............................ TGATAACCATGCTCAAACCACGCCTGGGCGCT 10830 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 10770 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 10710 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 10651 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 10592 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //