Array 1 18614-17646 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFO01000004.1 Bifidobacterium animalis subsp. animalis MCC 1489 M1489_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 18613 29 100.0 32 ............................. TCACGCATATTACCTTGCGTGGCCGCTGGAAT 18552 29 100.0 32 ............................. CTCATGCCGTCCATCGCGTCCGCCATGCTCTC 18491 29 100.0 32 ............................. TAATCCATGACGCCGTTTTTATCGTTCTCCAA 18430 29 100.0 32 ............................. GACAAGCGTAAGGCAGCGAGGGGCGGGAAGTC 18369 29 100.0 32 ............................. GCACGCTCGGTTGCCGGCGTGTAGTTGAGTTG 18308 29 100.0 32 ............................. TCGGCATCACGCAACGCCTGCACCTGAGTCAA 18247 29 100.0 32 ............................. GCGTCCGGCATGCTCACCGCGGACGGCAAACC 18186 29 100.0 32 ............................. GGTGGGCGACCAGCGCGAACGGTGCCGTCCAA 18125 29 100.0 32 ............................. CCAACAGCAGCCCAAGGCACGCTCATCGAAAG 18064 29 96.6 32 ............................A GGTTTTCGCGGCCGCATGTGATGTGCGAGCCG 18003 29 100.0 32 ............................. TTGGGGACGGCCGTCGGCTGTGGGTCGTCGCT 17942 29 100.0 31 ............................. GGCGTCTTCGACGTGGCCACCGCCTTCATAC 17882 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 17820 29 86.2 118 ..........T...A.A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTACCACACCTAATCACGGTGATTG 17673 28 79.3 0 .......T......A.T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 15 29 97.5 38 GTTTGCCCCGCACAGGCGGGGATGATCCG # Left flank : | # Right flank : GAGTGGTTCCGGCTAGCCTTAGCTGCCGGAACCACTTCGTCCAATCCTACCCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACGACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGTGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105317-106245 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFO01000005.1 Bifidobacterium animalis subsp. animalis MCC 1489 M1489_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 105317 29 100.0 32 ............................. CTGTATCCACGGCGACCCGTCATACACGAATT 105378 29 100.0 32 ............................. TGCAAGGCCGAGTCCCTTGCCTACGCCGCTGC 105439 29 100.0 32 ............................. CGCTGCGGGAGGACAGTCAGGGTCGTCGATTG 105500 29 100.0 32 ............................. GTTGCCCATAGCGCCTTCGATGGTCTGCGTCG 105561 29 100.0 32 ............................. TTCAGTATCCATGCGTCGCCCTTGTGGTGGCG 105622 29 100.0 32 ............................. AGATATGGGTCGAGCGCACGAGGTCTGCGCAG 105683 29 100.0 33 ............................. GTTCCGGCGCTAGCGCGGTATTAGCCGCTACAG 105745 29 100.0 32 ............................. GTGAGAGCGCAAGTCGGGTCAAGAAAACGTTG 105806 29 100.0 32 ............................. TAATACCCGTAATGGGAACTCGAATAGAAGAG 105867 29 100.0 77 ............................. GCCGGGGCGAAGGTGAAGACCTGGCGTGAGGTGTGCGGCAACAAGGGTCCTGCCGGATTCGGCGAGGTCGCCAAGAA 105973 29 100.0 32 ............................. GGTATTCGCTACGAGCTAGAGGGCGCGAAGAG 106034 29 100.0 32 ............................. AGCGAGAATTGGCTGGACGTGCAAGCGCGTGC 106095 29 100.0 32 ............................. ACCGAGTGTTTCATCAACTCAGCCAACGGATA 106156 29 100.0 33 ............................. TTGAGCGTGGGGTACTCAGGTATGCGATACATG 106218 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ============================================================================= ================== 15 29 99.8 35 GTTTGCCCCGCACAGGCGGGGATGATCCG # Left flank : TCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCGAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGTGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGACT # Right flank : | # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //