Array 1 65010-60773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCB01000022.1 Moraxella catarrhalis strain T6 T6_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 65009 28 100.0 33 ............................ AAAATGAGTCATATAATCGCTTGCATGAATGGT 64948 28 100.0 32 ............................ AAACCAAAAACAAAGTATTGCTGTTACTTCTC 64888 28 100.0 32 ............................ TCTTCCATGTACTTGTGCATACCTGAATTTTG 64828 28 100.0 32 ............................ ATATCACTGTCTACTTTTGGGCAATAAACCAT 64768 28 100.0 33 ............................ ATTATCATCTAAGATAATAGTATCAGTAATTAC 64707 28 100.0 32 ............................ AAAAGCGTCATATAGCTCATTATGCAGGCTAT 64647 28 100.0 32 ............................ TTATCAGAGGCTCTTTCGAGCCAAGTGCCATC 64587 28 100.0 32 ............................ TCTTTTGACATTTCAAATTTAAATTTATTCAT 64527 28 100.0 32 ............................ ATTATCTTCTCTTTTCCACTTTTTCTCACCAA 64467 28 100.0 32 ............................ AGTATCTGTCCACCAGTCAATAGACTTATTAT 64407 28 100.0 33 ............................ TTATATTCGTCAATAATATATAGGGGGTATACA 64346 28 100.0 32 ............................ ACATTGAAATATAATTATTTTCAATATCATAA 64286 28 100.0 32 ............................ CAAGTTTTTTCAATAAATTTACTTAGTGTAGT 64226 28 100.0 32 ............................ TGACAAGGCTAAAGGCGAGCAAATGCTTTTTG 64166 28 100.0 32 ............................ ATTGCAAGATAACGCTAGTACTTGCTGACGAT 64106 28 100.0 32 ............................ ATATTCGCCTGAGCAGGACTAATCTTAGTCAG 64046 28 100.0 32 ............................ GAGTTGGTTGCATTTATACACCAGCACAGGGC 63986 28 100.0 32 ............................ ACATTTTTCCCATCATCACTAAGCAGGACGGC 63926 28 100.0 32 ............................ ATCAATACCATCGGCTAAGTCAGGTATACTAA 63866 28 100.0 33 ............................ ATAAGCAATTTCCTGTTTTAATTCAACGTGGAT 63805 28 100.0 32 ............................ ATCTTCTAATTTACTGCCAACTTGCTCAAACG 63745 28 100.0 32 ............................ GAATTCCCAACCTGCGTAATTACCGCTATCAT 63685 28 100.0 32 ............................ ACGAATTCCCCAAATTCCACCTCAAAAAATGG 63625 28 100.0 33 ............................ GTAGGTTTGCCTGTAGGTACAATCTTGGCAACT 63564 28 100.0 32 ............................ AAACATACAACATCAAAAAGCTGTCGTATTTT 63504 28 100.0 32 ............................ AAGCTGTAGAAAAAATTCTTAATTGTCATGCT 63444 28 100.0 32 ............................ ATAAGCTTGGGCATACATGAGCAGGGCTATAT 63384 28 100.0 32 ............................ ATCAGCTAAATCGGGTATGTTAAAACTTTCTT 63324 28 100.0 32 ............................ CAAGTTTTTTCAATAAATTTACTTAGTGTAGT 63264 28 100.0 32 ............................ TGACAAGGCTAAAGGCGAGCAAATGCTTTTTG 63204 28 100.0 32 ............................ ATTGCAAGATAACGCTAGTACTTGCTGACGAT 63144 28 100.0 32 ............................ ATATTCGCCTGAGCAGGACTAATCTTAGTCAG 63084 28 100.0 32 ............................ GAGTTGGTTGCATTTATACACCAGCACAGGGC 63024 28 100.0 32 ............................ ACATTTTTCCCATCATCACTAAGCAGGACGGC 62964 28 100.0 32 ............................ ATCAATACCATCGGCTAAGTCAGGTATACTAA 62904 28 100.0 32 ............................ ATGCAATGCTTTCACATTCAGCACGGCGAAAA 62844 28 100.0 32 ............................ ATTCTCGCCCCGGAACTCTACTACTCTGCTAT 62784 28 100.0 32 ............................ CCATGGGCGTGTTATGCCACGCAGGCTCACGG 62724 28 100.0 32 ............................ TATATATAAGCACAAAAAAATTTCTATGAAAT 62664 28 100.0 33 ............................ ACAAACGAGATGGTAAGAAATGCCAGCGATATG 62603 28 100.0 32 ............................ ATATCTCGCCTATGGTATCAAAGAGTTCATTA 62543 28 100.0 32 ............................ AACATTATGATTCCTCTTAGCATTTCTATTAA 62483 28 100.0 32 ............................ GTACTTAGTGTTTGACTCTCCGAAAATTGAGC 62423 28 100.0 32 ............................ AAACCCAAGCAGTAGCAAAGATAATAGCCGTC 62363 28 100.0 32 ............................ AGCGTCAAACGATACTGTATTGCTTGGTAATT 62303 28 100.0 32 ............................ TAGAAATCTTTCTAGTCTAGAAAGTTTAGTTC 62243 28 100.0 32 ............................ AAAAATCATCATGAATGTCTTGCCATTTTAAA 62183 28 100.0 32 ............................ GAGCGTATAACGCCAAGTGCCGAACAAATACA 62123 28 100.0 32 ............................ AATTTGGGGTTTTTTTATTTGATACTATCTAA 62063 28 100.0 31 ............................ TCTGCTACTTTTTTCATTTCATTGTCAAGAG 62004 28 100.0 32 ............................ TTTAATTTATTGAATGTTTCTTTTGAGATTGA 61944 28 100.0 32 ............................ AATTAAACGTTTAGCTTCATGGATAGCACCTT 61884 28 100.0 32 ............................ ATAGATTTTGGTAGCCATATCAATGTAAACAT 61824 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 61764 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 61704 28 100.0 32 ............................ AAAGACACGCACATGACAGGCGTATCACAAGG 61644 28 96.4 32 ..........A................. AAGGATTTAACTTTATACTTGTTACTGGTATT 61584 28 100.0 32 ............................ AGTAGGTACAATCTTAGCAACTGACGCAGTAG 61524 28 100.0 32 ............................ ATAACCTGCTAAAGTCGTTGGCTTATTGGTAA 61464 28 100.0 31 ............................ AACTGTGCGTCAGTCAAATCATCCGCATTAA 61405 28 100.0 33 ............................ CTTGTTACATCTGATACTAAAACATCTTGAAAA 61344 28 100.0 32 ............................ AATAGGCAAGCTATCCGCATTGCCCTTTAAGC 61284 28 100.0 35 ............................ ATTAACACCGTCCGCCAGCTTGGCGTTGGTGGCTT 61221 28 100.0 32 ............................ GTCTGATTTTGATACATTGCTTTTGAACTTTT 61161 28 100.0 33 ............................ ATCCACATAGGGGCATGCAAAACCATCATCATC 61100 28 100.0 32 ............................ TCTTCAACGGTTGCTTGGGTGATTAAATAGCT 61040 28 100.0 32 ............................ ACATGCTTCTACTGCATTATCTGCCCATACAG 60980 28 100.0 32 ............................ ATTTCGTCTTTATCTTCGCTATCTGGCATATT 60920 28 100.0 32 ............................ GTAATGACTTCCCCAGTCTTGATATCAAACGG 60860 28 96.4 32 ..................T......... GTCAATGCGACTGTTTGACAGCTTGAGCTCGC 60800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 71 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTTGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //